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GSBSE

Molecular and Cellular Biology

Molecular and Cellular Biology seeks mechanistic understanding of broad aspects of development and disease, including cell signal transduction, stem cell fate determination, and tissue homeostasis at multiple levels that include intermolecular, cell-cell, tissue and organ function. Related research within the GSBSE ranges from basic developmental and disease processes in cell and animal models from zebrafish to mouse, to studies in humans, which emphasize vascular biology, stem cell biology, tissue development, homeostasis and pathology. Learn more >

Neuroscience

Neuroscience is an intrinsically broad discipline aimed at understanding large issues such as cognition, behavior, and neurological systems at levels that include the underlying anatomical and cellular circuits, and even the molecular events that control cell excitability, synaptic function, and development. Neuroscience research within the GSBSE ranges from psychology and psychometric studies in humans, to neuropharmacology and toxicology, to molecular genetics of neurodevelopment and neurodegenerative disease in model organisms. Learn more >

Biomedical Engineering

Biomedical Engineering may be defined as the application of engineering principles to promote and enhance the health and well-being of humans. Applications span the gamut of clinical, therapeutic and diagnostic arenas. Research strengths of the GSBSE include; artificial muscle, biomedical microdevices and microsystems, Lab-on-Chip, Biosensors, nanodevices and instruments, cell mechanics, robotic surgery, single molecule imaging, spectroscopy and microscopy of biological materials, and porous implants for tissue ingrowth. Learn more >

Toxicology

Toxicology is an applied discipline that incorporates and builds on a host of scientific disciplines to investigate the consequences of exposure to chemical agents on living organisms and the environment, and the cellular and molecular mechanisms that underlie those consequences. Research strengths of the GSBSE include; comparative marine toxicology, chemical carcinogenesis, immunotoxicology, toxicogenomics, neurotoxicology, and outer space toxicology. Learn more >

Bioinformatics and Computational Biology

Research in bioinformatics and computational biology is an interdisciplinary area of study that brings together biologists, computer and information scientists, mathematicians, engineers, biophysicists, and chemists to examine fundamental biological processes through data intensive analysis and computational modeling.
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GSBSE Select Publications

Group toggle arrow2081

  • *Wagner, P.L., M.N. Neely, X. Zhang, D.W. Acheson, M.K. Waldor, D. I. Friedman. Role for a phage promoter in Shiga toxin 2 expression from a pathogenic Escherichia coli strain. Journal of Bacteriology 183:2081-2085. 2001.

Group toggle arrow2017

  • Advances at the intersection of normal brain aging and Alzheimer's disease.
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  • Andralojc, K.M., Campbell, A.C., Kelly, A.L., Terrey, M., Tanner, P.C., Gans, I.M., Senter-Zapata, M.J., Khokhar, E.S., and Updike, D.L. (2017) ELLI-1, a novel germline protein, modulates RNAi activity and P-granule accumulation in Caenorhabditis elegans. PLoS Genetics
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  • Chen J, Howell C, Haller C, Ayala P, Moravec K, Dai E, Liu L, Sotiri I, Aizenberg M, Aizenberg J. and Chaikof, E. (2017) An Immobilized Liquid Interface Prevents Device Associated Bacterial Infection In Vivo. Biomaterials, 113, 80-92.
  • Dumont BL. (2017) Variation and evolution of the meiotic requirement for crossing over in mammals. Genetics 205:155-168.
  • Kovalenko Y, Sotiri I, Timonen JVI, Overton J, Holmes G, Aizenberg J, Howell C* (2017) Bacterial Adhesion to Immobilized Liquid Layers under Dynamic Conditions. Advanced Healthcare Materials, 1600948.
  • M. N. Neely. The zebrafish as a model for human bacterial infections. Methods Mol Biol. 1535:245-266. 2017
  • Tilbury KB, Campbell KR, Eliceiri KW, Salih SM, Patankar M, Campagnola, PJ. “Stromal alterations in ovarian cancers via wavelength dependent Second Harmonic Generation microscopy and optical scattering.” BMC Cancer. 2017;6(17).

Group toggle arrow2016

  • Abbott R, Wang R, Reagan MR, Chen Y, Borowsky FE, Zieba A, Marra K, Rubin JP, Ghobrial IM, Kaplan DL. The use of silk as a scaffold for mature, sustainable unilocular adipose 3D tissue engineered systems. Advanced Healthcare Materials. DOI: 10.1002/ adhm.201600211
  • Ames JJ, Contois L, Caron JM, Tweedie E, Yang X, Friesel R, Vary C1, Brooks PC. Identification of an Endogenously Generated Cryptic Collagen Epitope (XL313) That May Selectively Regulate Angiogenesis by an Integrin Yes-associated Protein (YAP) Mechano-transduction Pathway. J Biol Chem. 2016;291:2731-50.
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  • Brain-derived neurotrophic factor differentially modulates excitability of two classes of hippocampal output neurons.
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  • Burman, M.A, Szolusha, K., Bind, R., Kerney, K., Boger, D. & Bilsky, E. (2016). FAAH Inhibitor OL-135 Disrupts Contextual, but not Auditory, Fear Conditioning in Rats. Behavioural Brain Research. 308, 1-5
  • C. J. Demers, P. Soundararajan, G. A. Cox, J. Briscoe, P. Chennampally. S .D. Collins, and R. L. Smith, DEVELOPMENT-ON-CHIP: IN VITRO NEURAL TUBE PATTERNING WITH A MICROFLUIDIC DEVICE, Development, 143, 1884-1892, (2016). doi:10.1242/dev.126847
  • Coffman, J. A., Rieger, S., Rogers, A. N., Updike, D. L., and Viravuth P. Yin (2016). Comparative Biology of Tissue Repair, Regeneration, and Aging. NPJ Regenerative Medicine. Manuscript Number: NPJREGENMED-00033
  • Coffman, J.A., Rieger, S., Rogers, A.N., Updike, D.L., and Yin, V.P. (2016) Comparative biology of tissue repair, regeneration and aging, NPJ Regenerative Medicine. 1:16003
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  • Comparative biology of tissue repair, regeneration, and aging. Coffman, J.A., Rieger, S., Rogers, A.N., Updike, D.L, and Yin, V.P. (2016). npj Regen. Med., 1: 16003.
  • Crichton, G. E., Elias, M. F., & Alkerwi, A. (2016). Chocolate intake is associated with better cognitive function: The Maine-Syracuse Longitudinal Study. Appetite, 100, 126-132. doi: 10.1016/j.appet.2016.02.010
  • Crichton, G. E., Elias, M. F., & Robbins, M. (2016). Association between depressive symptoms, use of antidepressant medication and the metabolic syndrome: The Maine-Syracuse Study. BMC Public Health, 16, 502. doi: 10.1186/s12889-016-3170-2
  • Crichton, G. E., Elias, M. F., & Torres, R. V. (2016). Sugar-sweetened soft drinks are associated with poorer cognitive function in individuals with type 2 diabetes: The Maine-Syracuse Longitudinal Study. British Journal of Nutrition, 115, 1397-1405. doi: 10.1017/S0007114516000325
  • Crichton, G. E., Elias, M. F., Alkerwi, A., & Abhayaratna, W. (2016). Relation of habitual chocolate consumption to arterial stiffness in a community-based sample: Preliminary findings. Pulse, 4, 28-37. doi:10.1159/000445876
  • Crichton, G. E., Elias, M. F., Dearborn, P., & Robbins, M. (2016). Habitual chocolate intake and type 2 diabetes mellitus in the Maine-Syracuse Longitudinal Study: (1975-2010): Prospective observations. Appetite, 10, 263-269. doi: 10.1016/j.appet.2016.10.008
  • Dadwal U, Falank C, Fairfield H, Linehan S, Rosen CJ, Kaplan DL, Sterling J, Reagan MR. Tissue Engineered 3-D Bone for Cancer-in-Bone Modeling: Silk and PUR Protocols. BoneKey. Oct 19;5:842. PMID: 27790370.
  • Darash-Yahana M*, Pozniak Y*, Lu M*, Sohn Y-S, Karmi O, Tamir S, et al. (2016). Breast cancer tumorigenicity is dependent on high expression levels of NAF-1 and the lability of its Fe-S clusters. Proc. Natl. Acad. Sci. U.S.A. 113:10890-5 (*equal contribution)
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  • Deal, A.L.; Erickson, K.J.; Shiers S.I. & Burman, M.A. (2016). Limbic system development underlies the emergence of classical fear conditioning during the 3rd and 4th weeks of life in the rat. Behavioral Neuroscience. 130(2) 212-230
  • Dearborn, P.J., Robbins, M.A. & Elias, M.F. (2016) Challenging the “jolly fat” hypothesis among older adults: High body mass index predicts increases in depressive symptoms over a 5-year period. Journal of Health Psychology 21, 1-11. doi: 10.1177/1359105316675209
  • Dimitriadi M, Derdowski A, Kalloo G, Maginnis MS, O’Hern P, Bliska B, Sorkaç A, Nguyen KC, Cook SJ, Poulogiannis G, Atwood WJ, Hall DH, Hart AC. (2016). Decreased function of survival motor neuron protein impairs endocytic pathways. Proc Natl Acad Sci U S A. 2016 Jul 26;113(30):E4377-86.
  • Edwards, H., M. Rubenstein, A.A. Dombkowski, J.T. Caldwell, R. Chu, A.C. Xavier, R. Thummel, M. Neely, L.H. Matherly, Y. Ge, and J.W. Taub. Gene signature of high white blood cells count in B-precursor acute lymphoblastic leukemia. PLoS One. 11(8):1-9. 2016.
  • Elias, M. F., Torres, R. V., & Davey, A. (2016). The eye is the window to the kidney and brain. [Invited Commentary]. EBioMedicine, 5, 24-25.
  • Fairfield H, Falank C, Avery L, Reagan MR. Multiple Myeloma in the Marrow: Pathogenesis and Treatments. Ann N Y Acad Sci. 2016 Jan;1364(1):32-51. PMCID: PMC4806534.
  • G. Michopoulos, M. Shahinpoor, A. Iliopoulos, ”Multiphysics Modeling of Nonlinear Ionic Polymer Metal Composite Plates”, RSC Smart Materials Series, Number 18, Royal Society of Chemistry Publishers, pp: 285-310, Thomas Graham House, Science Park, Milton Road, Cambridge CB4 0WF, UK (2016)
  • Grondin CJ, Davis AP, Wiegers TC, King BL, Wiegers JA, Reif DM, Hoppin JA, Mattingly CJ. Advancing exposure science through chemical data curation and integration in the Comparative Toxicogenomics Database. Environ Health Perspect. 2016; 124(10):1592-1599.
  • H. Asanuma, K. Asaka, J. Su, L. Poubel, and M. Shahinpoor, “Smart Contact Oscillations by IPMCs”, Smart Materials and Structures International Journal, Volume 25, Number 2, February 2016, pp. 15015-15-022, (2016)
  • HP1BP3 expression determines maternal behavior and offspring survival.
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  • Harrison, Benjamin J; Venkat, Gayathri; Lamb, James L; Hutson, Tom H; Drury, Cassa; Rau, Kristofer K; Bunge, Mary Barlett; Mendell, Lorne M; Gage, Fred H; Johnson, Richard D; The Adaptor Protein CD2AP Is a Coordinator of Neurotrophin Signaling-Mediated Axon Arbor Plasticity Journal of Neuroscience 36 15 4259-4275 2016 Society for Neuroscience
  • Hippocampal proteomics defines pathways associated with memory decline and resilience in normal aging and Alzheimer's disease mouse models.
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  • Juthani N, Howell C*, Ledoux H, Sotiri I, Kelso S, Kovalenko Y, Tajik A, Vu T, Sutton A, Aizenberg J. (2016) Infused polymers for cell sheet release. Nature Scientific Reports 6, 26109.
  • Kilroy EA, Crabtree OM, Crosby B, Parker A, Barfield WR (2016). The effect of single-leg stance on dancer and control group static balance. International Journal of Exercise Science, 9(2), 110-120.
  • King BL, Yin VP. A conserved gene regulatory circuit is dynamically controlled during limb/appendage regeneration in the vertebrates. PLoS ONE. 2016.1(6):e0157106. Featured in Science Shot on June 29, 2016 DOI: 10.1126/science.aag0632.
  • Losick, VP, Jun, AS, and Spradling, AC. Wound-Induced Polyploidization: Regulation by Hippo and JNK Signaling and Conservation in Mammals. PLoS One. 2016 Mar 9;11(3):e0151251.
  • M. Shahinpoor, ”Ionic Polymer Metal Composites as Dexterous Manipulators and Haptic Feedback/Tactile Sensors for Minimally Invasive Robotic Surgery”, RSC Smart Materials Series, Number 18, Royal Society of Chemistry Publishers, pp. 311-340, Thomas Graham House, Science Park, Milton Road, Cambridge CB4 0WF, UK (2016)
  • Manier S, Powers J, Sacco A, Glavey S, Huynh D, Reagan MR, Salem K, Moschetta M, Shi J, Mishima Y, Roche-Lestienne C, Leleu X, Roccaro A, Daley G, and Ghobrial I. The LIN28B/let-7 axis is a novel therapeutic pathway in Multiple Myeloma. Leukemia. doi: 10.1038/leu.2016.296
  • McDonald M, Fairfield H, Falank C, Reagan MR. Adipose, Bone and Myeloma: Contributions from the Microenvironment. Calcified Tissue International. 2016. PMID: 27343063
  • Moorman DE, James MH, Kilroy EA, Aston-Jones G. (2016). Orexin/hypocretin neuron activation is correlated with alcohol seeking and preference in a topographically specific manner. European Journal of Neuroscience, 43(5), 710-720.
  • Oklahoma Health Sciences Center. 2016.
  • P. Bakhtiarpour, A. Parvizi, M. Muller, M. Shahinpoor, O. Marti and M. Amirkhani, “An External Disturbance Sensor for Ionic Polymer Metal Composite Actuator”, Smart Materials and Structures International Journal, Volume 25, Number 1, January 2016, pp. 15008-15014(7), (2016)
  • PLoS One. 2016 Apr 21;11(4):e0154176. doi: 10.1371/journal.pone.0154176. PMID:27100463
  • Rau, Kristofer K; Hill, Caitlin E; Harrison, Benjamin J; Venkat, Gayathri; Koenig, Heidi M; Cook, Sarah B; Rabchevsky, Alexander G; Taylor, Bradley K; Hai, Tsonwin; Petruska, Jeffrey C; Cutaneous tissue damage induces long-lasting nociceptive sensitization and regulation of cellular stress-and nerve injury-associated genes in sensory neurons Experimental neurology 283 413-427 2016 Academic Press
  • Roberts NB, Juntti SA, Coyle KP, Dumont BL, Stanley MK, Ryan AQ, Fernald RD, Roberts RB. (2016) Polygenic sex determination in the cichlid fish Astatotilapia burtoni. BMC Genomics 17:835.
  • Rouchka, Eric C; Chariker, Julia H; Harrison, Benjamin J; Park, Juw Won; Cao, Xueyuan; Pounds, Stanley; Raimondi, Susana; Downing, James; Ribeiro, Raul; Rubnitz, Jeffery; Proceedings of the 15th Annual UT-KBRIN Bioinformatics Summit 2016 BMC Bioinformatics 17 10 297 2016 BioMed Central
  • Saka, Ernur; Harrison, Benjamin J; West, Kirk; Petruska, Jeffrey C; Rouchka, Eric C; Region-based custom chip description formats for reanalysis of publicly available affymetrix® genechip® data sets Computational Advances in Bio and Medical Sciences (ICCABS), 2016 IEEE 6th International Conference on 1-Jan 2016 IEEE
  • Semin Cell Dev Biol. 2016 Aug 10. pii: S1084-9521(16)30246-4. doi: 10.1016/j.semcdb.2016.08.008. [Epub ahead of print] PMID: 27521522
  • Shahinpoor, ”Ionic Polymer Metal Composites as Soft Biomimetic Robotic Artificial Muscles”, RSC Smart Materials Series, Number 18, Royal Society of Chemistry Publishers, pp. 341-363, Thomas Graham House, Science Park, Milton Road, Cambridge CB4 0WF, UK (2016)
  • Sotiri I, Overton J, Waterhouse A, Howell C (2016) Immobilized liquid layers: a new approach to anti-adhesion surfaces for medical applications. Invited mini review in Experimental Biology and Medicine. 241, 909-918.
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  • Sunny S, Cheng G, Daniel D, Lo P, Ochoa S, Howell C, Vogel N, Majid A, Aizenberg J (2016) Transparent antifouling material for improved operative field visibility in endoscopy. Proceedings of the National Academy of Sciences, 113,11676-11681.
  • Systems genetics identifies Hp1bp3 as a novel modulator of cognitive aging.
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  • Torres, R. V., Elias, M. F., Seliger, S., Davey, A., & Robbins, M. A. (2016). Risk for cognitive impairment across 22 measures of cognitive ability in early-stage chronic kidney disease. Nephrology, Dialysis and Transplantation. doi: 10.1093/ndt/gfw005 [published on line,
  • Tumor Necrosis Factor α Regulates Endothelial Progenitor Cell Migration via CADM1 and NF-kB.
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  • Veld J, O’Donnell EK, Yee AJ, Torriani M, Reagan MR, Rosen CJ, Bredella MA. Abdominal adipose tissue in MGUS and multiple myeloma. Skeletal Radiol. 2016 Sep;45(9):1277-83. doi: 10.1007/s00256-016-2425-4.
  • Wen B, Campbell K, Tilbury K, Nadiarnykh O, Brewer M, Patankar M, Singh V, Eliceiri K, Campagnola P. “3D texture analysis for classification of second harmonic generation images of human overian cancer.” Sci Rep. 2016; 6(10).
  • Y. Suzuki*, M.Lu*, E. Ben-Jacob, and J. Onuchic. Periodic, quasi-periodic and chaotic dynamics in simple gene elements with time delays. (2016) Sci. Rep. 6: 21037 (*equal contribution)
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  • Young K, Krebs LT, Tweedie E, Conley B, Mancini M, Arthur HM, Liaw L, Gridley T, Vary C. Endoglin is required in Pax3-Derived Cells for Embryonic Blood Vessel Formation. Dev Biol. 2016;409:95-105.
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  • “Arsenic inhibits mast cell degranulation via suppression of early tyrosine phosphorylation events,” Juyoung Shim*, Rachel H. Kennedy*, Lisa M. Weatherly, Lee M. Hutchinson, Jonathan H. Pelletier, Hina N. Hashmi, Kayla Blais, Alejandro Velez, Julie A. Gosse (*contributed equally), 2016, Journal of Applied Toxicology, doi: 10.1002/jat.3300
  • “Triclosan is a Mitochondrial Uncoupler in Live Zebrafish,” Juyoung Shim, Lisa M. Weatherly, Richard H. Luc, Maxwell T. Dorman, Andy Neilson, Ryan Ng, Carol H. Kim, Paul J. Millard, Julie A. Gosse, 2016, Journal of Applied Toxicology, doi: 10.1002/jat.3311

Group toggle arrow2015

  • 1. Kirov A., Kacer D., Conley B. A., Vary C. P., Prudovsky I. AHNAK2 Participates in the Stress-Induced Nonclassical FGF1 Secretion Pathway. J Cell Biochem. 2015, Epub ahead of print.
  • A Review of the Updated Pharmacophore for the Alpha 5 GABA(A) Benzodiazepine Receptor Model.
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  • A. A. Amiri Moghadam, A. Kouzani, K. Torabi, A. Kaynak and M. Shahinpoor, “Development of a Novel Soft Parallel Robot equipped with Polymeric Artificial Muscles”, Smart Materials and Structures, Volume 24, Number 3, 5017, (2015)
  • A. Fallahi, M. Alahbakhshi, E. Mohajerani, F. Afshar Taromi, A. Mohebbi and M. Shahinpoor, “Cationic Water-Soluble Conjugated Polyelectrolytes/ Graphene Oxide Nanocomposites as Efficient Green Hole Injection Layers in OLEDs”, J. Phys. Chem. C, Volume 119, Number 23, pp 13144–13152, (2015)
  • B. Huang, M. Jolly, M. Lu, E. Ben-Jacob, I. Tsarfaty, and J. Onuchic. Modeling the tranition between collective and solitary migration phenotypes in cancer metastasis. (2015) Sci. Rep. 5:17379
  • Brown AC, Muthukrishnan S, Oxburgh L. A Synthetic Niche for Nephron Progenitor Cells. Developmental Cell. 2015 Jul 27;34(2):229-41.
  • Brown AC, Muthukrishnan SD, Oxburgh L. A synthetic niche for nephron progenitor cells. Dev Cell. 2015 Jul 27;34(2):229-41.
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  • Brown AC, Muthukrishnan SD, Oxburgh L. A synthetic niche for nephron progenitor cells. Developmental Cell, July 2015
  • Campbell, A. C., and D. L. Updike, (2015) CSR-1 and P granules suppress sperm-specific transcription in the C. elegans germline. Development 142: 1745–1755.
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  • Chaudhary R, Campbell, KR, Tilbury KB, Vanderby R Jr., Block WF, Kijowski R, Campagnola, PJ. “Articular cartilage zonal differentiation via 3D Second-Harmonic Generation imaging microscopy.” Connect Tissue Res. 2015; 56(2): 76-86.
  • Contois L, Akalu A, Caron JM, Tweedie E, Cretu A, Henderson T, Liaw L, Friesel R, Vary C, Brooks PC. Inhibition of tumor-associated avb3 integrin regulates the angiogenic switch by enhancing expression of IGFBP-4 leading to reduced melanoma growth and angiogenesis in vivo. Angiogenesis.
  • DLL4/Notch1 and BMP9 Interdependent Signaling Induces Human Endothelial Cell Quiescence via P27KIP1 and Thrombospondin-1. Arterioscler Thromb Vasc Biol. 2015 Dec;35(12):2626-37, PMID: 26471266
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  • Developmental control of transcriptional and proliferative potency during the evolutionary emergence of animals. Arenas-Mena, C. and Coffman, J.A. (2015). Dev. Dyn., 244: 1193-1201.
  • Diet composition, not calorie intake, rapidly alters intrinsic excitability of hypothalamic AgRP/NPY neurons in mice.
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  • Dumont BL, Devlin AA, Truempy DM, Miller JC, Singh ND. (2015) No evidence that infection alters global recombination rate in house mice. PLoS ONE 10: e0142266.
  • Dumont BL. (2015) Interlocus gene conversion explains at least 2.7% of single nucleotide variants in human segmental duplications. BMC Genomics 16: 456.
  • E. Ben-Jacob, M. Lu, D. Schultz, J. Onuchic. (2015) The physics of bacterial decision making. Front. Cell. Infect. Microbiol. 4: 154
  • Elias, M. F., Crichton, G. E., & Abhayaratna, W. P. (2015). Interactions between plasma homocysteine and arterial stifness in chronic kidney disease in community-dwelling individuals: The Maine-Syracuse Study. Journal of Human Hypertension, 29, 726-731. doi:10.1038/jhh.2015.17
  • Elias, M. F., Seliger, S., & Torres, R. V. (2015). Improved cognitive performance after a single dialysis session: Where do we go from here? [Peer Reviewed Editorial]. Nephrology Dialysis Tranplantation, 30, 1414-1417. doi: 10.1093/ndt/gtv263
  • Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ. (2015) A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome. Annu Rev Genet. 49:213-42.
  • Gene expression changes associated with the developmental plasticity of sea urchin larvae in response to food availability. Carrier, T.J., King, B.L., and Coffman, J.A. (2015). Biological Bulletin, 228: 171-180.
  • Glavey SV, Huynh D, Reagan MR, Manier S, Moschetta M, Kawano Y, Roccaro AM, Ghobrial IM, Joshi L, O'Dwyer ME. The cancer glycome: Carbohydrates as mediators of metastasis. Blood Rev. 2015 Jan 23. Epub ahead of print. PMID: 25636501
  • H. Derar and M. Shahinpoor, “Recent Patents and Designs on Hip Replacement Prostheses”, Open Biomed Eng J. , vol 9, pp. 92-102, (2015)
  • Harrison, Benjamin J; Venkat, Gayathri; Hutson, Thomas; Rau, Kristofer K; Bunge, Mary Bartlett; Mendell, Lorne M; Gage, Fred H; Johnson, Richard D; Hill, Caitlin; Rouchka, Eric C; Transcriptional changes in sensory ganglia associated with primary afferent axon collateral sprouting in spared dermatome model Genomics Data 6 249-252 2015 Elsevier
  • Hayashi L, Sheth M, Young A, Kruger M, Wayman GA, Coffin AB (2015) The effect of the aquatic contaminants bisphenol-A and PCB-95 on the zebrafish lateral line. Neurotoxicology 46:125–136.
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  • Hougland, M Tyler; Harrison, Benjamin J; Magnuson, David SK; Rouchka, Eric C; Petruska, Jeffrey C; The transcriptional response of neurotrophins and their tyrosine kinase receptors in lumbar sensorimotor circuits to spinal cord contusion is affected by injury severity and survival time Plasticity of primary afferent neurons and sensory processing after spinal cord injury 197 2015 Frontiers Media SA
  • Howell C, Vu T, Johnson C, Hou X, Ahanotu O, Alvarenga J, Leslie D, Uzun O, Waterhouse A, Kim P, Super M, Aizenberg M, Ingber D, Aizenberg J (2015) Stability of Surface-Immobilized Lubricant Interfaces Under Flow. Chemistry of Materials, 27, 1792-1800.
  • Improved rat genome gene prediction by integration of ESTs with RNA-Seq information.
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  • J. Duy, R. L. Smith, S. D. Collins and L. B. Connell, RAPID COLORIMETRIC DETECTION OF THE FUNGAL PHYTOPATHOGEN SYNCHYTRIUM ENDOBIOTICUM USING CYANINE DYE-INDICATED PNA HYBRIDIZATION, American J. Potato Research, 92: 398-409 (2015).
  • Kelly, AL, Senter-Zapata, MJ, Campbell, AC, Lust, HE, Theriault, ME, Andralojc, KM, & Updike, DL. (2015) A forward genetic screen for suppressors of somatic P granules in C. elegans. G3.
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  • Kirov A, Kacer D, Conley BA, Vary CP, Prudovsky I. AHNAK2 Participates in the Stress-Induced Nonclassical FGF1 Secretion Pathway. J Cell Biochem. J Cell Biochem. 2015 Aug;116(8):1522-31
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  • Luisa J. Ströh*, Maginnis, M.S.*,+, Bärbel S. Blaum, Christian D.S. Nelson, Ursula Neu, Gretchen V. Gee, Bethany A. O’Hara, Nasim Motamedi, Dan DiMaio, Walter J. Atwood, and Thilo Stehle. (2015). Increased affinity of JC Polyomavirus capsid for LSTc over other sialylated glycans is a major determinant of infectivity. Journal of Virology, 89(12):6364-75. *, Denotes equal contribution.
  • M. Boareto, M. Jolly, M. Lu, J. Onuchic, C. Clementi, and E. Ben-Jacob. (2015) Jagged-Delta asymmetry in Notch signaling can give rise to a sender/receiver hybrid phenotype. Proc. Natl. Acad. Sci. U.S.A. doi: 10.1073/pnas.1416287112
  • M. Jolly, M. Boareto, B. Huang, D. Jia, M. Lu, J. Onuchic, H. Levine, and E. Ben-Jacob. (2015) Implications of the hybrid epithelial/mesenchymal phenotype in metastasis. Front. Oncol. 5:155
  • M. Jolly, M. Boareto, M. Lu, J. Onuchic, C. Clementi, and E. Ben-Jacob. (2015) Operating principles of Notch–Delta–Jagged module of cell–cell communication. New J. Phys. 17 (5):055021
  • MacCallum N, Howell C, Kim P, Sun D, Friedlander R, Ranisau J, O. Ahanotu, Lin J, Hatton B, Wong T-S, Aizenberg J (2015), Oil-infused silicone tubing as a biofouling-free medical material. ACS Biomaterials Science and Engineering, 1, 43-51.
  • Methods Mol Biol. 2015;1290:205-26. doi: 10.1007/978-1-4939-2495-0_17.
  • Muthukrishnan SD, Yang X, Friesel R, Oxburgh L. Concurrent BMP7 and FGF9 signaling governs AP-1 function to promote self-renewal of nephron progenitor cells. December 2015. DOI: 10.1038/ncomms10027
  • Muthukrishnan SD, Yang X, Friesel R, Oxburgh L. Concurrent BMP7 and FGF9 signalling governs AP-1 function to promote self-renewal of nephron progenitor cells. Nat Commun. 2015 Dec 4;6:10027.
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  • Paik D.T., Rai M., Ryzhov S., Sanders L.N., Aisagbonhi O., Funke M.J., Feoktistov I., Hatzopoulos A.K. Wnt10b Gain-of-Function Improves Cardiac Repair by Arteriole Formation and Attenuation of Fibrosis. Circ Res. 2015 PMCID: PMC In Process
  • Reagan MR, Liaw L, Rosen CJ & Ghobrial IM. Dynamic Interplay between Bone and Multiple Myeloma: Emerging Roles of the Osteoblast. Bone. 2015;75:161-169. Epub ahead of print. PMID: 25725265
  • Reagan, MR and Rosen CJ. Navigating the Bone Marrow Niche: Translational Insights and Cancer-Driven Dysfunction. Nature Reviews Rheumatology. 2015. Mar; 12(3): 154-68. PMID: 26607387.
  • Ren G, Esposito MB, Kang Y. Bone metastasis and the metastatic niche. Journal of Molecular Medicine. 2015 Nov;93(11):1203-12.
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  • Reznichenko A, Korstanje R (2015) The Role of Platelet-Activating Factor in Mesangial Pathophysiology. American Journal of Pathology (in press).
  • Roccaro AM, Mishima, Y, Sacco A, Moschetta M, Shi J, Zhang Y, Reagan MR, Huynh D, Kawano Y, Sahin I, Chiarini M, Manier S, Cea M, Aljawai Y, Glavey S, Pan C, Cardarelli P, Kuhne M, Ghobrial IM. CXCR4 regulates extra-medullary myeloma through epithelial-mesenchymal-transition-like transcriptional activation. Cell Rep. 2015. Jul 28;12(4):622-35. PMID: 26190113.
  • Rostama B, Turner JE, Seavey GT, Norton CR, Gridley T, Vary CP, Liaw L. DLL4/Notch1 and BMP9 Interdependent Signaling Induces Human Endothelial Cell Quiescence via P27KIP1 and Thrombospondin-1. Arterioscler Thromb Vasc Biol. 2015.
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  • Rouchka, Eric C; Chariker, Julia H; Harrison, Benjamin J; Proceedings of the Fourteenth Annual UT-KBRIN Bioinformatics Summit 2015 BMC Bioinformatics 16 Suppl 15 I1 2015 BioMed Central Ltd
  • Rowe, H.M.*, B.R. Hanson*, D.L. Runft, Q. Lin, S.M. Firestine and M.N.Neely. Modification of the CpsA protein reveals a role in alteration of the Streptococcus agalactiae cell envelope. Infection & Immunity. 83(4):1497-1506. 2015.
  • Stohn JP, Wang Q, Siviski ME, Kennedy K, Jin Y, Kacer D, DeMambro V, Liaw L, Vary CP, Rosen CJ, Prudovsky O, Lindner V. Cthrc1 Controls Adipose Tissue Formation, Body Composition, and Physical Activity. Obesity (Silver Spring). 2015 Aug;23(8):1633-42.
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  • Stringari C, Wang H, Geyfman M, Crosignani V, Kumar V, Takahashi JS, Andersen, B, Gratton E. In Vivo single-cell detection of metabolic oscillations in stem cells. Cell Reports 10: 1-7 2015.
  • Strome, S., and D. L. Updike, (2015) Specifying and Protecting Germ Cell Fate. Nature Reviews Mol Cell Biol 16(7), 406-416.
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  • TRPC3 channels critically regulate hippocampal excitability and contextual fear memory.
    Read abstract
  • Tesler A, Kim P, Kolle S, Howell C, Ahanotu O, Aizenberg J (2015) Extremely durable biofouling-resistant metallic surfaces based on electrodeposited nanoporous tungstate films on steel. Nature Communications, 6, 8649-1-10.
  • Tilbury K, Campagnola, Paul. “Applications of Second Harmonic Generation imaging microscopy in ovarian and breast cancer.” Perspectives in Medicinal Chemistry. 2015;7:21-32.
  • Uygur B, Abramo K, Leikina E, Vary C, Liaw L, and Wu W. SLUG is a direct transcriptional repressor of PTEN tumor suppressor. Prostate. 2015 Jun 15;75(9):907-16.
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  • Whitehurst LN, Fogler K, Hall K, Hartmann M, Dyche J. The effects of chronic marijuana use on circadian entrainment. Chronobiol Int. 2015;32(4):561-7.
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  • Yang X, Liaw L, Prudovsky I, Brooks, PC, Vary, C, Oxburgh, L, and Friesel R. FGF Signaling in the Vasculature. Current Atherosclerosis Reports. 2015 Jun;17(6):509.
  • Yin, W., Bond, K., Rouf, F., & Rubenstein, D. A. (2015). Altered Flow Changes Thrombin Generation Rate of Circulating Platelets. Annals of biomedical engineering, 1-11.
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  • Young K, Tweedie E, Conley B, Ames JJ, FitzSimons M, Brooks P, Liaw L, Vary CPH. BMP9 crosstalk with the Hippo pathway regulates endothelial cell matricellular and chemokine responses. PLoS ONE. 2015; Apr 24;10(4):e0122892
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  • Yuryeva K., Saltykova I., Ogorodova L., Kirillova N., Kulikov E., Korotkaya E., Iakovleva Y., Feoktistov I., Sazonov A., Ryzhov S. Expression of adenosine receptors in monocytes from patients with bronchial asthma. Biochem Biophys Res Commun, 2015 PMCID: PMC In Process
  • Yuwen Li, Jiao Liu, Wencheng Li, Aaron Brown, Melody Baddoo, Marilyn Li, Thomas Carroll, Leif Oxburgh, Yumei Feng, and Zubaida Saifudeen. p53 Enables Metabolic Fitness and Self-Renewal of Nephron Progenitor Cells. Development. 2015 Apr 1;142(7):1228-41.
  • “Antimicrobial Agent Triclosan is a Proton Ionophore Uncoupler of Mitochondria in Living Rat and Human Mast Cells and in Primary Human Keratinocytes,” Lisa M. Weatherly, Juyoung Shim, Hina N. Hashmi, Rachel H. Kennedy, Samuel T. Hess, and Julie A. Gosse, in press, Journal of Applied Toxicology

Group toggle arrow2014

  • "Notch signal integration in the vasculature during remodeling", Rostama B, Peterson SM, Vary CP, Liaw L, Vascul Pharmacol. 2014 Nov;63(2):97-104, PMID: 25464152
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  • *Namprachan-Frantz, P., *H.M. Rowe, *D.L. Runft and M.N. Neely, Transcriptional analysis of the Streptococcus pyogenes salivaricin locus. Journal of Bacteriology 196(3):604-613. 2014.
  • *Rowe, H.M., J. H. Withey and M. N. Neely. Zebrafish as a model for aquatic zoonotic pathogens. Developmental and Comparative Immunology. 46(1):96-107. 2014
  • *Runft, D.L., K.C. Mitchell, B.H. Abuaita, *J.P. Allen, *S. Bajer, K. Ginsburg, M.N. Neely and J.H. Withey. Zebrafish as a natural host model for Vibrio cholerae colonization and transmission. Applied and Environmental Microbiology. 80(5):1710-1717. 2014.
  • 2. Wang T, Green LA, Gupta SK, Kim C, Wang L, Almodovar S, Flores SC, Prudovsky IA, Jolicoeur P, Liu Z, Clauss M. Transfer of Intracellular HIV Nef to Endothelium Causes Endothelial Dysfunction. PLoS One. 2014 Mar 7;9(3):e91063
  • A. Fallahi, F. Afshar Taromi, A. Mohebbi, J. D. Yuen and M. Shahinpoor, “A Novel Ambipolar Polymer: From Organic Thin-Film Transistors to Enhanced Air-Stable Blue Light Emitting Diodes”, accepted for publication, Journal of Material Chemistry C, (2014), published online June 6, (2014)
  • Aging (Albany NY). 2014 May;6(5):399-413.
  • Ananda G, Hinerfeld D, Korstanje R (2014) Whole genome sequence of the C57L/J mouse inbred strain. G3 4(9):1689-1692.
  • B. Huang, M. Lu, M. Jolly, I. Tsarfaty, J. Onuchic and E. Ben-Jacob. (2014) The three-way switch operation of Rac1/RhoA GTPase-based circuit controlling amoeboid-hybrid-mesenchymal transition. Sci. Rep. 4:6449
  • Burman, M.A., Erickson, K.J., Deal, A.L. & Jacobson, R.E. (2014). Contextual and Auditory Fear Conditioning Continue to Emerge During the Periweaning Period in Rats. PLOS ONE.
  • Burman, M.A., Simmons, C.A., Hughes, M., Lei, L. (2014). Developing and validating trace fear conditioning protocols in C57BL/6 mice. Journal of neuroscience methods 222, 111-117
  • Crichton, G. E., Elias, M. F., Dore, G. A., Torres, R. V., & Robbins, M. A. (2014). Measurement-to-measurement blood pressure variability is related to cognitive performance: The Maine-Syracuse Study. Hypertension, 64(5), 1094-1101. Doi: 1161/hypertensionaha.114.04282.
  • Davis S.E., Hopke, A., Minkin, S.C. Jr., Montedonico, A.E., Wheeler, RT, Reynolds, T.B. (2014). Masking of β(1-3)-glucan in the cell wall of Candida albicans from detection by innate immune cells depends on phosphatidylserine. Infect. Immun. 82(10):4405-13.
  • Deal, A.L., Erickson, K.J., Bilsky, E.J., Hillman, S.J. & Burman, M.A. (2014). K-12 Neuroscience education outreach program: Interactive activities for educating students about neuroscience. Journal of Undergraduate Neuroscience Education (JUNE).
  • Differentiation. 2014 Jan-Feb;87(1-2):66-75. doi: 10.1016/j.diff.2014.02.002. Review.
  • Duarte CW, Murray K, Lucas FL, Fairfield K, Miller H, Brooks PC, Vary CP. Improved Survival Outcomes in Cancer Patients with Hereditary Hemorrhagic Telangiectasia.
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  • Faller, C.E., Favreau, A.J., Guvench, O. Atomic Resolution Mechanism of Cd44-Hyaluronan Protein-Carbohydrate Binding. 2014 Biophysical Journal 106(2):659a
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  • Favreau AJ, Vary CP, Brooks PC, Sathyanarayana P. Cancer Med. 2014 Apr;3(2):265-72. Cryptic collagen IV promotes cell migration and adhesion in myeloid leukemia.
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  • Favreau, A.J., Vary, C.P., Brooks, P.C., Sathyanarayana, P. Cryptic collagen IV promotes cell migration and adhesion in myeloid leukemia. 2014 Cancer Medicine 3(2):265-72
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  • Fetting JL, Guay JA, Karolak MJ, Iozzo RV, Adams DC, Maridas DE, Brown AC, Oxburgh L. FOXD1 promotes nephron progenitor differentiation by repressing decorin in the embryonic kidney. Development. 2014 Jan;141(1):17-27.
  • Flight, Robert M; Harrison, Benjamin J; Mohammad, Fahim; Bunge, Mary B; Moon, Lawrence DF; Petruska, Jeffrey C; Rouchka, Eric C; categoryCompare, an analytical tool based on feature annotations Frontiers in genetics 5 98 2014 Frontiers
  • Galindo C.L., Ryzhov S., Sawyer D.B. Neuregulin as a heart failure therapy and mediator of reverse remodeling. Curr Heart Fail Rep. 2014; 11(1):40-49. PMCID: PMC3975684.
  • Galindo CL, Kasasbeh E, Murphy A, Ryzhov S, Lenihan S, Ahmad FA, Williams P, Nunnally A, Adcock J, Song Y, Harrell FE, Tran TL, Parry TJ, Iaci J, Ganguly A, Feoktistov I, Stephenson MK, Caggiano AO, Sawyer DB, Cleator JH. Anti-remodeling and Anti-fibrotic Effects of the Neuregulin-1β Glial Growth Factor 2 in a Large Animal Model of Heart Failure. J Am Heart Assoc. 2014;3(5). PMCID: PMC4323814
  • Gilbert, A.S., Wheeler, R.T., May, R.C. (2014) Fungal Pathogens: Survival and Replication within Macrophages. Cold Spring Harb Perspect Med. Published online Nov. 10, 2014.
  • Glavey SV, Manier S, Natoni A, Sacco A, Moschetta M, Reagan MR, Murillo LS, Sahin I, Wu P, Mishima Y, Zhang Y, Zhang W, Zhang Y, Morgan G, Joshi L, Roccaro AM, Ghobrial IM, O'Dwyer ME.. The Sialyltransferase ST3GAL6 Influences Homing and Survival in Multiple Myeloma. Blood. 2014; Epub Ahead of print. PMID: 25061176
  • Gramlich, W. M.; Rai, R.; Hollaway, J. L.; Burdick, J. A. Transdermal gelation of methacrylated macomers with near-infrared light and gold nanorods. Nanotechnology, 2014, 25, 014004.
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  • Gratacap R.L., Wheeler, R.T. (2014) Exploitation of zebrafish to enable intravital study of eukaryotic pathogen-host interactions. Dev. Comp. Immunol. 46(1):108-15.
  • Gratacap, R.L., Bergeron, A.C., Wheeler, R.T. (2014). Modeling mucosal candidiasis in larval zebrafish by swimbladder injection. J. Vis. Exp. Issue 93
  • Grindrod, C.M., Garnett, E.O., Malyutina, S., & den Ouden, D.B. (2014). Effects of representational distance between meanings on the neural correlates of semantic ambiguity. Brain and Language, 139, 23-35.
  • Hall G, Tilbury KB, Campbell KR, Eliceiri KW, Campagnola PJ. “Experimental and simulation study of the wavelength dependent second harmonic generation of collage in scattering tissues.” Optic Letter. 2014;39(7):1897-900.
  • Han XH, Jin YR, Tan L, Kosciuk T, Lee JS, Yoon JK. Regulation of the follistatin gene by RSPO-LGR4 signaling via activation of the WNT/beta-catenin pathway in skeletal myogenesis. Mol Cell Biol. 34: 752-764 (2014).
  • Harrison, Benjamin J; Flight, Robert M; Eteleeb, Abdallah M; Rouchka, Eric C; Petruska, Jeffrey C; UTR extension and alternate polyadenylation in neuroplasticity: an emerging paradigm? BMC Bioinformatics 15 10 P11 2014 BioMed Central
  • Harrison, Benjamin J; Flight, Robert M; Gomes, Cynthia; Venkat, Gayathri; Ellis, Steven R; Sankar, Uma; Twiss, Jeffery L; Rouchka, Eric C; Petruska, Jeffrey C; IB4‐binding sensory neurons in the adult rat express a novel 3′ UTR‐extended isoform of CaMK4 that is associated with its localization to axons Journal of Comparative Neurology 522 2 308-336 2014 Wiley Online Library
  • Hills Jr., R.D. 2014. Balancing bond, nonbond and Gō-like terms in coarse grain simulations of conformational dynamics. Methods Mol. Biol. 1084:123-40.
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  • Hogan, D.A., Wheeler, R.T. (2014). The complex roles of NADPH oxidases in fungal infection. Cell. Microbiol. 16(8):1156-1167.
  • Howard, Amber and Aric N. Rogers (2014). Role of Translation Initiation Factor 4G in Lifespan Regulation and Age-related Health. Ageing Research Reviews, 13C, 115-124. PMID: 24394551
  • Howell C, Vu T, Lin J, Kolle S, Juthani N,Watson E, Weaver J, Alvarenga J, Aizenberg J (2014). Self-replenishing vascularized fouling-release surfaces. ACS Applied Materials and Interfaces, 6, 13299-13307.
  • Huang Y, Caputo CR, Noordmans GA, Yazdani S, Monteiro LH, van den Born J, van Goor H, Heeringa P, Korstanje R, Hillebrands JL (2014) Identification of novel genes associated with renal tertiary lymphoid organ formation in aging mice. PLOS ONE 9(3):e91850.
  • J. Duy, S. D. Collins, R. L. Smith and L. B. Connell, A FIELD-DEPLOYABLE COLORIMETRIC BIOASSAY FOR THE RAPID AND SPECIFIC DETECTION OF RIBOSOMAL RNA, Biosensors and Bioelectronics, 52, 433–437 (2014).
  • Kandpal, S.K. ; Co, A. ; Allcroft, K. Neivandt, D.J. ; Bousfield, D.W. ; Mason, M.D. “Laser Induced Fluorescent Micro-Structures in Silver Nanoparticle Based Films” Optical Materials 36, 873 (2014)
  • Kandpal, S.K. ; Otterson, S. ; Neivandt, D.J. ; Bousfield, D.W. ; Mason, M.D. “Investigation of Laser Induced Structure Formation and Resultant Fluorescece” submitted
  • Korstanje R, Caputo C, Doty R, Cook S, Bronson R, Davisson M, Miner J (2014) A splice site mutation in mouse Col4a4 with abnormal collagen IV protomers: genetic background affects the Alport syndrome phenotype. Kidney International 85(6):1461-1468.
  • Kortum, A.N., I. Rodriguez-Nunez, J. Yang, J. Shim, *D. Runft, M.L. O’Driscoll, R.N. Haire, J.P. Cannon, P.M. Turner, R.T. Litman, C.H. Kim, M.N. Neely, G.W. Litman and J. A. Yoder. Differential expression and ligand binding indicate alternative functions for zebrafish polymeric immunoglobulin receptor (plgR) and a family of plgR-like (PIGRL) proteins. Immunogenetics. 66(4):267-279. 2014.
  • Lee SH, Lee S, Yang H, Song S, Kim K, Saunders TL, Yoon JK, Koh GY, Kim I. The Notch pathway targets proangiogenic regulator Sox17 to restrict angiogenesis. Circ Res. 115:215-226 (2014).
  • Lemmon, Vance P; Ferguson, Adam R; Popovich, Phillip G; Xu, Xiao-Ming; Snow, Diane M; Igarashi, Michihiro; Beattie, Christine E; Bixby, John L; Consortium, MIASCI; Abeyruwan, Saminda W; Minimum Information About a Spinal Cord Injury Experiment (MIASCI)–a proposed reporting standard for spinal cord injury experiments Journal of neurotrauma ja 2014
  • Leptin modulates the intrinsic excitability of AgRP/NPY neurons in the arcuate nucleus of the hypothalamus.
    Read abstract
  • Leslie D, Waterhouse A, Berthet J, Valentin T, Watters A, Jain A, Kim P, Hatton B, Nedder A, Mullen K, Super E, Howell C, Johnson C, Vu T, Rifai S, Hansen A, Aizenberg M, Super M, Aizenberg J, Ingber D (2014). A Bioinspired Surface Coating for Medical Devices that Prevents Thrombosis and Biofouling. Nature Biotechnology, 32, 1134-1140.
  • Losick VP. Wound-induced polyploidy is required for tissue repair. Adv Wound Care. 2014, ahead of print. doi:10.1089/wound.2014.0545. Review.
  • M. Jolly, B. Huang, M. Lu, S. Mani, H. Levine and E. Ben-Jacob. (2014) Towards elucidating the connection between epithelial-mesenchymal transitions and stemness. J. R. Soc. Interface. 11:20140962
  • M. Lu, B. Huang, S. Hanash, J. Onuchic and E. Ben-Jacob. (2014) Modeling putative therapeutic implications of exosome exchange between tumor and immune Cells. Proc. Natl. Acad. Sci. U.S.A. doi: 10.1073/pnas.1416745111
  • M. Lu, J. Onuchic and E. Ben-Jacob. (2014) Construction of an Effective Landscape for Multistate Genetic Switches. Phys. Rev. Lett. 113 (7): 078102
  • M. Lu, M. Jolly, J. Onuchic and E. Ben-Jacob. (2014) Toward decoding the principles of cancer metastasis circuits. Cancer Res. 74(17):4574-4587
  • M. Mohammadi and M. Shahinpoor, “Noninvasive Urinary Incontinence Control Device”, ASME Journal of Medical Devices, Vol. 8, Issue 4, Paper No. MED-13-1191, 5 pages, Design Innovation Paper, (2014)
  • M. Shahinpoor and I. Oh, “Selected papers from the 7th. International Conference on Biomimetics, Artificial Muscles and nano-Bio (BAMN2013)”, Smart Materials and Structures Int. Journal, vol. 23, Number 7, 070301, (2014)
  • M. Shahinpoor and S. Gheshmi, “Robotic Surgery: with Smart Materials, Robotic Structures and Artificial Muscles”, PAN Stanford Publishing, Penthouse Level, Suntec Tower, 8 Temasek Boulevard, Singapore 038988, August (2014)
  • Maginnis, M.S., Nelson, C.D.S., and Atwood, W.J. (2014). JC Polyomavirus Attachment, Entry, and Trafficking: Unlocking the Keys to a Fatal Infection. Journal of Neurovirology. In press.
  • McLane, V.D., L. Cao and C.L. Willis. Morphine increases hippocampal viral load and suppresses frontal lobe CCL5 expression in the LP-BM5 AIDS model, J. Neuroimmunol., 2014.
    Read abstract
  • Noordmans GA, Huang Y, Savage H, van Dijk MCRF, Schaart G, van den Bergh Weerman MA, Heeringa P, Hillebrands JL, Korstanje R, van Goor H (2014) Genetic analysis of intracapillary glomerular lipoprotein deposits in aging mice. PLoS ONE 9(10):e111308.
  • On the meaning of chance in biology. Coffman, J.A. (2014). Biosemiotics 7: 377-388.
  • Oral-aboral axis specification in the sea urchin embryo IV. Hypoxia radializes embryos by preventing the initial spatialization of nodal activity. Coffman, J.A., Wessels, A., DeSchiffart, C., and Rydlizky, K. (2014). Dev. Biol. 386: 302-307.
  • Parlato R, Mandl C, Hoelzl-Wenig G, Liss B, Tucker K L, Ciccolini F (2014) Regulation of proliferation and histone acetylation in embryonic neural precursors by CREB/CREM signaling.
    Neurogenesis 1(1): 1-13.
  • Rau, K; Spears, C; Harrison, B; Venkat, G; Johnson, R; Cooper, B; Petruska, J; (350) Molecular and electrophysiological characterization of sensory neurons after muscle incision Journal of Pain, The 15 4 S63-S63 2014 Elsevier
  • Reagan MR, Mishima Y, Glavey S, Zhang Y, Manier S, Lu ZN, Memarzadeh M, Zhang Y, Sacco A, Aljawai Y, Tai Y-T, Ready JE, Shi J, Kaplan DL, Roccaro AM, Ghobrial IM. Investigating osteogenic differentiation in Multiple Myeloma using a novel 3D bone marrow niche model. Blood. 2014; 124(22):3250-9. PMCID: PMC4239334.
  • Ren G, Liu Y, Zhao X, Zheng B, Yuan Z, Zhang L, Qu X, Tischfield JA, Shao C and Shi Y. Tumor Resident Mesenchymal Stromal Cells Endow Naïve Stromal Cells with Tumor-promoting Properties. Oncogene, 2014 Jul 24;33(30):4016-20.
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  • Roccaro AM, Sacco A, Purschke WG, Moschetta M, Buchner K, Maasch C, Zboralski D, Zöllner S, Vonhoff S, Mishima Y, Maiso P, Reagan MR, Lonardi S, Ungari M, Facchetti F, Eulberg D, Kruschinski A, Vater A, Rossi G, Klussmann S, Ghobrial IM. SDF-1 inhibition targets the bone marrow niche for cancer therapy. Cell Reports. 2014; 9(1):118-28. PMCID: PMC4194173
  • Rostama B, Peterson SM, Vary CPH, and Liaw L. Notch signal integration in the vasculature during remodeling. Vascular Pharmacology
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  • Ryzhov S, Biktasova A, Goldstein AE, Zhang Q, Biaggioni I, Dikov MM, Feoktistov I. Role of JunB in adenosine A2B receptor-mediated VEGF production. Mol Pharm 2014; 85(1):62-73.
  • Ryzhov S, Pickup P.W., Chytil A., Zhang Q., Owens P., Feoktistov I., Moses H.L., Novitskiy S.V. Role of TGFβ signaling in generation of CD39+CD73+ myeloid cells in tumors. J Immunol. 2014; 193(6):3155-164. PMCID:PMC4157098
  • Ryzhov S., Sung BH, Zhang Q, Weaver A, Gumina RJ, Biaggioni I, Feoktistov I. Role of adenosine A2B receptor signaling in contribution of cardiac mesenchymal stem-like cells to myocardial scar formation. Purinergic Signal. 2014; 10(3):477-86. PMCID: PMC4152448.
  • Shaw JR, Hampton TH, King BL, Whitehead A, Galvez F, Gross RH, Keith N, Notch E, Jung D, Glaholt SP, Chen CY, Colbourne JK, Stanton BA. Natural selection canalizes expression variation of environmentally induced plasticity-enabling genes. Mol Biol Evol. 2014; 31(11):3002-15.
  • Stem Cell Res. 2014 Nov;13(3 Pt B):705-14. doi: 10.1016/j.scr.2014.06.004. Review.
  • Sunny S, Vogel N, Howell C, Vu T, Aizenberg J (2014), Lubricant-Infused Nanoparticulate Coatings Assembled by Layer-by-Layer Deposition. Advanced Functional Materials, 24, 6658-6667.
  • Swami A* & Reagan MR*, Basto P, Mishima Y, Kamaly N, Glavey S, Zhang S, Moschetta M, Seevaratnam D; Zhang Y, Liu J, Memarzadeh T, Wu J, Manier S, Shi J, Bertrand N, Lu ZN, Nagano K, Baron R, Sacco A, Roccaro AM, Farokhzad OC, Ghobrial IM. Engineered Nanomedicine for Myeloma and Bone Microenvironment Targeting. PNAS. 2014;111(28):10287-92. *Co-first authorship. PMCID: PMC4104924.
  • Tai YT, Landesman Y, Acharya C, Calle Y, Zhong MY, Cea M, Tannenbaum D, Cagnetta A, Reagan M, Munshi AA, Senapedis W, Saint-Martin JR, Kashyap T, Shacham S, Kauffman M, Gu Y, Wu L, Ghobrial I, Zhan F, Kung AL, Schey SA, Richardson P, Munshi NC, Anderson KC. CRM1 inhibition induces tumor cell cytotoxicity and impairs osteoclastogenesis in multiple myeloma: molecular mechanisms and therapeutic implications. Leukemia. 2014; 28(1):155-65. PMCID: PMC3883926
  • Tilbury K, Hocker J, Wen BL, Sandbo N, Singh V, Campagnola PJ. “ Second harmonic generation microscopy analysis of extracellular matrix changes in human idiopathic pulmonary fibrosis.” Journal of biomedical optics. 2014;19(8):086014.
  • Tilbury K, Lien CH, Chen SJ, Campagnola PJ. “Differentiation of Col I and Col III isoforms in stromal models of ovarian cancer by analysis of second harmonic generation polarization and emission directionality.” Biophysical journal. 2014;106(2):354-365.
  • Updike, D.L., Knutson, A.K., Egelhofer, T.A., Campbell, A.C. Strome S. (2014) Germ-granule components prevent somatic development in the C. elegans germline. Curr Biol. 24(9); 970-975.
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  • Wang, N.-Y., K. A. Patras, H. S. Seo, C. K. Cavaco, B. Rӧsler, M. N. Neely, P. M. Sullam, K. S. Doran. Group B streptococcal serine-rich repeat proteins promote interaction with fibrinogen and vaginal colonization. Journal of Infectious Diseases. 210(6):982-991. 2014
  • Ward, Patricia J; Herrity, April N; Smith, Rebecca R; Willhite, Andrea; Harrison, Benjamin J; Petruska, Jeffrey C; Harkema, Susan J; Hubscher, Charles H; Novel Multi-System Functional Gains via Task Specific Training in Spinal Cord Injured Male Rats Journal of neurotrauma 31 9 819-833 2014 Mary Ann Liebert, Inc. 140 Huguenot Street, 3rd Floor New Rochelle, NY 10801 USA
  • Wilson-Edell, Kathleen A., Yevtushenko, Mariya A., Rothschild, D. E., Rogers, Aric N., and Christopher C. Benz (2014). mTORC1/C2 and pan-HDAC inhibitors synergistically impair breast cancer growth by convergent AKT and polysome inhibiting mechanisms. Breast Cancer Research and Treatment, 144(2), 287-98. PMID: 24562770
  • Zhang W, Wang YE, Zhang Y, Leleu X, Reagan M, Zhang Y, Mishima Y, Glavey S, Manier S, Sacco A, Jiang B, Roccaro AM, Ghobrial IM. Global Epigenetic Regulation of MicroRNAs in Multiple Myeloma. PLoS One. 2014; 9(10): e110973. PMCID: PMC4201574.
  • Zhang Y, Moschetta M, Huynh D, Tai YT, Zhang Y, Zhang W, Mishima Y, Ring JE, Tam WF, Xu Q, Maiso P, Reagan M, Sahin I, Sacco A, Manier S, Aljawai Y, Glavey S, Munshi NC, Anderson KC, Pachter J, Roccaro AM, Ghobrial IM. Pyk2 promotes tumor progression in multiple myeloma. Blood. 2014 Oct 23;124(17):2675-86. PMID: 25217697

Group toggle arrow2013

  • "A receptor-specific function for Notch2 in mediating vascular smooth muscle cell growth arrest through cyclin-dependent kinase inhibitor 1B" Boucher JM, Harrington A, Rostama B, Lindner V, Liaw L, Circulation Research; 2013 Sep;113(8):975-985, PMID: 23965337
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  • 3. Poole A, Knowland N, Cole R, Wang R, Booth L, Kacer D, Tarantini F, Friesel R, Prudovsky I. Transitory FGF treatment results in the long-lasting suppression of the proliferative response to repeated FGF stimulation. J Cell Biochem. 2013, 155:874-88.
  • 4. Gong Y, Yang X, He Q, Gower L, Prudovsky I, Vary CP, Brooks PC, Friesel RE. Sprouty4 regulates endothelial cell migration via modulating integrin β3 stability through c-Src. Angiogenesis. 2013, 16:861-75.
  • 5. Danza G, Di Serio C, Ambrosio MR, Sturli N, Lonetto G, Rosati F, Rocca BJ, Ventimiglia G, Del Vecchio MT, Prudovsky I, Marchionni N, Tarantini F. Notch3 is activated by chronic hypoxia and contributes to the progression of human prostate cancer. Int J Cancer. 2013, 133: 2577-86
  • 6. Sterling SM, Allgeyer ES, Fick J, Prudovsky I, Mason MD, Neivandt DJ. Phospholipid Diffusion Coefficients of Cushioned Model Membranes Determined via Z-Scan Fluorescence Correlation Spectroscopy. Langmuir. 2013 Jun 6. [Epub ahead of print]
  • 7. Prudovsky I. Nonclassically secreted regulators of angiogenesis. Angiology: Online Access 2013, 1:1-5.
  • 8. Prudovsky I, Kumar TK, Sterling S, Neivandt D. Protein-phospholipid interactions in nonclassical protein secretion: problem and methods of study. Int J Mol Sci. 2013 14(2):3734-72. PMCID in process.
  • Atochina-Vasserman E.N., Biktasova A., Abramova E., Cheng D.S., Polosukhin V.V., Tanjore H., Takahashi S., Sonoda H., Foye L., Venkov C., Ryzhov S.V., Novitskiy S., Shlonimskaya N., Ikeda M., Blackwell T.S., Lawson W.E., Gow A.J., Harris R.C., Dikov M.M., Tchekneva E.E. Aquaporin 11 insufficiency modulates kidney susceptibility to oxidative stress. Am J Physiol Renal Physiol. 2013; 304(10):F1295-1307. PMCID: PMC3651623.
  • Bradley CK, Norton CR, Chen Y, Han X, Booth CJ, Yoon JK, Krebs LT, Gridley T. The snail family gene snai3 is not essential for embryogenesis in mice. PLoS One. Jun 6;8(6):e65344 (2013).
  • Breen MJ, Moran DM, Liu W, Huang X, Vary CPH, and Bergan RC. Endoglin-Mediated Suppression of Prostate Cancer Invasion Is Regulated by Activin and Bone Morphogenetic Protein Type II Receptors. 2013. PLoS One. 2013 Aug 13;8(8):e72407.
  • Brothers K.M., Gratacap R.L., Barker S.E., Newman Z.R., Norum A., Wheeler R.T. (2013) NADPH oxidase-driven phagocyte chemotaxis controls Candida albicans filamentous growth and prevents mortality. PLoS Pathog.
  • Brown AC, Muthukrishnan S, Guay JA, Adams DC, Schafer DA, Fetting JL, Oxburgh L. Role for compartmentalization in nephron progenitor differentiation. PNAS. 2013. Mar 19;110(12):4640-5.
  • Brown AC, Muthukrishnan SD, Guay JA, Adams DC, Schafer DA, Fetting JL, Oxburgh L. Role for compartmentalization in nephron progenitor differentiation.
    Proc Natl Acad Sci U S A. 2013 Mar 19;110(12):4640-5.
    Read abstract
  • D. Chatterjee, N. Hanumaiah, Y. Bahramzadeh and M. Shahinpoor, “Actuation and Sensing Studies of a Miniaturized Five Fingered Robotic Hand Made with Ion Polymeric Metal Composite (IPMC)”, Advanced Materials Research, Vol. 740 (2013) pp.: 492-495, Trans Tech Publications, Switzerland, (2013)
  • D. Schultz*, M. Lu*, T. Stavropoulos, J. Onuchic and E. Ben-Jacob. (2013) Turning Oscillations Into Opportunity Spikes: A Lesson from Bacterial Decision Gate. Sci. Rep. 3:1668 (*equal contribution)
  • Davey, A., Elias, M. F, Robbins, M. A, Seliger, S. L., & Dore, G. A. (2013). Decline in renal functioning is associated with longitudinal decline in global cognitive functioning, abstract reasoning, and verbal memory. Nephrology Dialysis and Transplantation, 28, 1810-1819.
  • Developmental cis-regulatory analysis of the cyclin D gene in the sea urchin Strongylocentrotus purpuratus. McCarty, C.M., and Coffman, J.A. (2013). Biochem. Biophys. Research Comm. 440: 413-418.
  • Dowell KG, Simons AK, Wang ZZ, Yun K, Hibbs MA (2013) Cell-Type-Specific Predictive Network Yields Novel Insights into Mouse Embryonic Stem Cell Self-Renewal and Cell Fate. PLoS ONE 8(2): e56810. doi:10.1371/journal.pone.0056810
    Read abstract
  • Dumont BL, Eichler EE. (2013) Signals of historical interlocus recombination in human segmental duplications. PLoS ONE 8: e75949.
  • Duy, W.D. ; Hackett, B.E. ; Nadeau, S. ; Alcott, S. ; Mlsna, T.E. ; Neivandt, D.J. ; Vetelino, J.F. “A Lateral-Field-Excited Acoustic Wave Peroxide Based Explosive Sensor”, IEEE Sensors Journal 13,4780 (2013).
  • Eteleeb, Abdallah M; Flight, Robert M; Harrison, Benjamin J; Petruska, Jeffrey C; Rouchka, Eric C; An Island-Based Approach for Differential Expression Analysis Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics 419 2013 ACM
  • Favreau, A. J., Faller, C. E. & Guvench, O. CD44 Receptor Unfolding Enhances Binding by Freeing Basic Amino Acids to Contact Carbohydrate Ligand. Biophys J 105, 1217-1226, doi:10.1016/j.bpj.2013.07.041 (2013).
    Read abstract
  • Gabor, K.A., C. Sullivan and C.H. Kim. Snakehead Rhabdovirus. Mononegaviruses of Veterinary Importance Vol I: Pathobiology and Molecular Diagnosis (Eds M. Munir). 337-351.
  • Gabor, K.A., C.R. Stevens, M.J. Pietraszewski, T.J. Gould, S.H. Lam, Z. Gong, S.T. Hess, and C.H. Kim. Super resolution microscopy reveals that caveolin-1 is required for spatial organization of CRFB1 and subsequent antiviral signaling and zebrafish. PLoS ONE 8 (7): e68759. doi:10.1371/journal.pone.0068759
  • Gong Y, Qing H, Yang X, Gower L, Prudovsky I, Vary CPH, Brooks P, and Friesel RE. Sprouty4 regulates endothelial cell migration via modulating Integrin ?3 stability through c-Src. Angiogenesis. 2013 Oct;16(4):861-75.
  • Goody, M. F., E. Peterman, C. Sullivan, C.H. Kim. Quantification of the Respiratory Burst Response as an Indicator of Immune Health in Zebrafish. J. Vis. Exp.12 (79). doi: 10.3791/5066
  • Gramlich, W.M.; Kim, I.L.; Burdick, J. A. Synthesis and orthogonal photopatterning of hyaluronic acid hydrogels with thiol-norbornene chemistry. Biomaterials, 2013, 34, 9803-9811.
    Read abstract
  • Gratacap R.L., Rawls J.F., Wheeler R.T. (2013) Mucosal candidiasis elicits NF-κB activation, proinflammatory gene expression and localized neutrophilia in zebrafish. Dis. Model. Mech. 6(5) 1260-1270.
  • Gudheti, M. V., N.M. Curthoys, T.J. Gould, D. Kim, M.S. Gunewardene, K.A. Gabor, J.A. Gosse, C.H. Kim, J. Zimmerberg, and S.T. Hess. Actin mediates the nanoscale membrane organization of the clustered membrane protein influenza hemagglutinin. Biophys J. 104(10):2182-92.
  • Harvie, A.E., M.N. Neely and A. Huttenlocher. Innate Immune response to Streptococcus iniae infection in zebrafish. Infection & Immunity. 81(1):110-121. 2013.
  • Hoekstra EJ, von Oerthel L, van der Heide LP, Kouwenhoven WM, Veenvliet JV, Wever I, Jin YR, Yoon JK, van der Linden AJ, Holstege FC, Groot Koerkamp MJ, Smidt MP. Lmx1a encodes a rostral set of mesodiencephalic dopaminergic neurons marked by the Wnt/b-catenin signaling activator R-spondin 2. PLoS One. Sep 16;8(9):e74049 (2013).
  • Hoffman, E.P., Gordish-Dressman, H., McLane, V.D., Cox, G.A., et al. Alterations in osteopontin modify muscle size in females in both humans and mice. Med Sci Sports Exerc, June 2013.
    Read abstract
  • Howell C, Hamoudi H, Koelsch P, Zharnikov M (2013). Thymine/adenine diblocks-oligonucleotide monolayers and hybrid brushes on gold: a spectroscopic study. Biointerphases 8, 6.
  • J Immunol Methods. 2013 Jul 31;393(1-2):74-80. doi: 10.1016/j.jim.2013.03.012.
  • Jiménez-López C., Collette J.R., Brothers K.M., Shepardson K.M., Cramer R.A., Wheeler R.T., and Lorenz M.C. (2013) Candida albicans induces arginine biosynthetic genes in response to host-derived reactive oxygen species. Euk Cell; 12(1): 91-100.
  • Knowles CJ, Cebova M, Pinz IM: Palmitate diet-induced loss of cardiac caveolin-3: A novel mechanism for lipid-induced contractile dysfunction. PLosOne 2013, Apr 9;8(4):e61369. PMCID: PMC3621834.
  • Kumar V, Andersen B, Takahashi JS. Epidermal stem cells ride the circadian wave. Genome Biology 14: 140-143. 2013.
  • Kumar V, Kim K, Joseph C, Kourrich S, Yoo SH, Huang HC, Vitaterna MH, Pardo- Manuel de Villena F, Churchill G, Bonci A, Takahashi JS. C57BL/6N mutation in Cytoplasmic FMRP interacting protein 2 (Cyfip2) regulates cocaine response. Science 342: 1508-1512. 2013.
  • Leif Oxburgh, Aaron C. Brown, Deepthi Muthukrishnan, Jennifer L. Fetting. Bone morphogenetic protein signaling in nephron progenitor cells. Pediatric nephrology. 2013 Aug 20.
  • Lien CH, Tilbury K, Chen SJ, Campagnola PJ. “Precise, motion-free polarization control in Second Harmonic Generation microscopy using a liquid crystal modulator in the infinity space.” Biomedical optics express. 2013;4(10):1991-2002.
  • Lionakis M.S., Swamydas M., Fischer B.G., Plantinga T.S., Johnson M.D., Jaeger M., Masedunskas A., Weigert R., Mikelis C., Wan W., Lee C-C.R., Lim J.K., Yang J.C., Laird G.M., Wheeler R.T., Alexander B.D., Perfect J.R., Gao J-L., Kullberg B-J., Netea M.G., and Murphy P.M. (2013) Chemokine Receptor CX3CR1 Promotes Early Fungal Clearance and Survival in Systemic Candidiasis by Inhibiting Apoptosis of Kidney Resident Macrophages J. Clin. Invest. 123(12):5035-51.
  • Long DA, Kolatsi-Joannou M, Price KL, Dessapt-Baradez C, Huang JL, Papakrivopoulou E, Hubank M, Korstanje R, Gnudi L, Woolf AS (2013) Albuminuria: too few glomeruli and too much testosterone. Kidney International 83(6):1118-1129.
  • Losick, VP, Fox DT, and Spradling, AC. Polyploidization and cell fusion contribute to wound healing in the adult Drosophila epithelium. Current Biology. 2013, Nov 18; 23(22):2224-32.
  • M. Hajiaghamemar, M. Seidi, W. Andrew, Hodge, A. E. Allen, J. St. Pierre, J. A. Long, V. Caccese, M. Shahinpoor, S. Elmer, “Quantifying Functional Improvements Following X-STOP Spacer Procedure for Treatments of Spinal Stenosis: A Case Report”, Proceedings of 2013 New England Chapter of the American College of Sports Medicine, Fall 2013 Conference, (2013)
  • M. Lu, M. Jolly, H. Levine, J. Onuchic and E. Ben-Jacob. (2013) MicroRNA-based regulation of epithelial–hybrid–mesenchymal fate determination. Proc. Natl. Acad. Sci. U.S.A. 110:18144-18149
  • M. Lu, M. Jolly, R. Gomoto, B. Huang, J. Onuchic and E. Ben-Jacob. (2013) Tristability in Cancer-Associated MicroRNA-TF Chimera Toggle Switch. J. Phys. Chem. B. 117:13164-13174
  • M. Lu, and J.Ma. (2013) PIM: Phase Integrated Method for Normal Mode Analysis of Biomolecules in Crystalline Environment. J. Mol. Biol. 425: 1082-1098
  • M. Shahinpoor, “Chitosan/IPMC Artificial Muscles”, Advances in Science and Technology, Trans Tech Publications, Switzerland, Vol. 79, pp: 32-40, (2013)
  • M. Shahinpoor, “Muscular Biopolymers”, Book Chapter published in “Topics in Engineered Biomimecry: Biomimetics, Bioinspiration and Bioreplication”, edited by Akhlesh Lakhtakia and Raul-Jose Martin-Palma, Elsevier publishers, Waltham, MA, USA, (2013)
  • Maginnis, M.S., Ströh, L.J., Gee, G.V., O’Hara, B.A., Derdowski, A., Stehle, T., and Atwood, W.J. (2013). PML-associated Mutations in the JC Polyomavirus Capsid Disrupt LSTc Binding. mBio, 4(3) e00247-13.
    Read abstract
  • Marakalala M.J., Vautier S., Potrykus J., Walker L.A., Shepardson K.M., Hopke A., Mora-Montes H.M., Kerrigan A., Netea M.G., Murray G.I., MacCallum D.M., Wheeler R., Munro C.A., Gow N.A.R., Cramer R.A., Brown A.J.P. and Brown G.D. (2013) Differential adaptation of Candida albicans in vivo modulates immune recognition by Dectin-1. PLoS Pathogens. 9(4):e1003315.
  • Miranda LN, Hutchison K, Grossman AR, Brawley SH. (2013) Diversity and abundance of the bacterial community of the red Macroalga Porphyra umbilicalis: did bacterial farmers produce macroalgae? PLoS One. 2013;8(3):e58269.
    Read abstract
  • Natarajan S, Li Y, Miller EE, Shih DJ, Taylor MD, Stearns TM, Bronson RT, Ackerman SL, Yoon JK, Yun K. Notch1-Induced Brain Tumor Models the Sonic Hedgehog Subgroup of Human Medulloblastoma. Cancer Res.73:5381-5390 (2013).
  • Neuser F, Polack M, Annaheim C, Tucker K L, Korte M (2013) Region-specific integration of embryonic stem cell-derived neuronal precursors into a pre-existing neuronal circuit.
    PLoS One, 8(6): e66497.
  • Noordmans GA, Caputo RC, Huang Y, Sheehan SM, Bulthuis M, Heeringa P, Hillebrands JL, van Goor H, Korstanje R (2013) Genetic analysis of mesangial matrix expansion in aging mice and identification of Far2 as a candidate gene. Journal of the American Society of Nephrology 24:1995-2001.
  • Norton CR, Chen Y, Han XH, Bradley CK, Krebs LT, Yoon JK, Gridley T. Absence of a major role for the Snai1 and Snai3 genes in regulating skeletal muscle regeneration in mice. PLoS Curr. Nov 8 (2013).
  • Oxburgh L, Brown AC, Muthukrishnan SD, Fetting JL.Bone morphogenetic protein signaling in nephron progenitor cells. Pediatr Nephrol. 2013 Aug 20
    Read abstract
  • Proc Natl Acad Sci U S A. 2013 Jun 4;110(23):9415-20. doi: 10.1073/pnas.1300290110.
  • Prudovsky, I. ; Kumar, T.K. ; Sterling, S. ; Neivandt, D. “Protein-Phospholipid Interactions in Nonclassical Protein Secretion and Methods of their Study” International Journal of Molecular Sciences 14, 1374 (2013)
  • R. Glaser, V. Caccese and M. Shahinpoor, “Development of Novel Smart MFR-Gates for Wireless Dynamic Control of Fluid Flow”, Smart Materials and Structures Journal, vol. 22, no.1, (17pp), pp. 1-17, (2013)
  • Rau, K; Harrison, B; Venkat, G; Hill, C; Petruska, J; Molecular and electrophysiological changes induced by skin incision: implications for the development of chronic pain Journal of Pain, The 14 4 S53-S53 2013 Elsevier
  • Ren G, Kang Y. A one-two punch of miR-126/126* against metastasis. Nature Cell Biology. 2013 Mar 1;15(3):231-3.
    Read abstract
  • Roccaro A, Sacco A, Maiso P, Azab A, Tai Y, Reagan MR, Azab F, Flores L, Campigotto F, Weller E, Anderson KC, Scadden D, Ghobrial I. Bone marrow mesenchymal stromal cell-derived exosomes support multiple myeloma pathogenesis. J Clin Invest. 2013;123(4):1542-55. PMCID: PMC3613927.
  • Ryzhov S, Zhang Q, Biaggioni I, Feoktistov I. Adenosine A2B Receptors on Cardiac Stem Cell Antigen (Sca)-1-Positive Stromal Cells Play a Protective Role in Myocardial Infarction. Am J Pathol. 2013; 183(3):665-672. PMCID: PMC3763763.
  • Sea urchin akt activity is Runx-dependent and required for post-cleavage stage cell division. Robertson, A.J., Coluccio, A., Jensen, S., Rydlizky, K., and Coffman, J.A. (2013). Biology Open, 2: 472-478.
  • Sharma AR, Choi BS, Park JM, Lee DH, Lee JE, Kim HS, Yoon JK, Song DK, Nam JS, Lee SS. Rspo 1 promotes osteoblast differentiation via Wnt signaling pathway. Indian J Biochem Biophys. 50(1):19-25 (2013).
  • Shimomura K, Kumar V, Koike N, Kim TK, Chong J, Buhr ED, Whiteley AR, Low SS, Omura C, Fenner D, Owens JR, Richards M, Yoo SH, Hong HK, Vitaterna MH, Bass J, Pletcher MT, Wiltshire T, Hogenesch JB, Lowrey PL, Takahashi JS. Usf1, a sup- pressor of the circadian clock mutant, reveals the nature of the DNA-binding of the CLOCK:BMAL1 complex in mice. E-Life 2:e00426. 2013.
  • Sterling, S.M. ; Allgeyer, E.S. ; Fick, J. ; Prudovsky, I. ; Mason, M.D. ; Neivandt, D.J. “Phospholipid Diffusion Coefficients of Cushioned Model membranes determined via Z-Scan Fluorescence Correlation Spectroscopy”, Langmuir 29, 7966 (2013)
  • Streicher JM, Groer CE, Munro T, Béguin C, Cohen BM, Bohn LM. 6’-Guanidinonaltrindole (6’-GNTI) is a potent and functionally unique kappa opioid agonist that displays bias against beta-arrestin recruitment and receptor internalization. Molecular Pharmacology. In revision.
  • Tarchini, B., Jolicoeur, C., and Cayouette, M. (2013). A molecular blueprint at the apical surface establishes planar asymmetry in cochlear hair cells. Developmental Cell 27, 88-102.
    Read abstract
  • Targeting the endothelial progenitor cell surface proteome to identify novel mechanisms that mediate angiogenic efficacy in a rodent model of vascular disease.
    Read abstract
  • Tarver JE, Sperling EA, Nailor A, Heimberg AM, Robinson JM, King BL, Pisani D, Donoghue PC, Peterson KJ. miRNAs: small genes with big potential in metazoan phylogenetics. Mol Biol Evol. 2013 Nov;30(11):2369-82.
  • Vassiliev, T. ; Bernhardt, P. ; Neivandt, D.J. “Innovative Composite Research Modeled in the Middle School Classroom” Science Scope, 37, 42 (2013).
  • Vincentz JW, Firulli BA, Lin A, Spicer DB, Howard MJ, Firulli AB. Twist1 controls a cell-specification switch governing cell fate decisions within the cardiac neural crest. PLoS Genet. 2013 Mar;9(3):e1003405
    Read abstract
  • Y. Bahramzadeh and M. Shahinpoor, “A Review of Ionic Polymeric Soft Actuators and Sensors”, Int. Journal of Soft Robotics, Vol. 1, No. 1, pp. 38-52, (2013), Mary-Ann Lieber, Inc. Publishing, New York, USA, (2013)
  • Yoo SH, Mohawk JA, Siepka SM, Shan Y, Huh SK, Hong HK, Kornblum I, Kumar V, Koike N, Xu M, Nussbaum J, Liu X, Chen Z, Chen ZJ, Green CB, and Takahashi JS. Competing E3 Ubiquitin Ligases Govern Circadian Periodicity by Degradation of CRY in Nucleus and Cytoplasm. Cell 152(5): 1091-1105. 2013.
  • Z. R. Smith, R. L. Smith and S. D. Collins, MECHANISM OF NANOWIRE FORMATION IN METAL ASSISTED CHEMICAL ETCHING, Electrochimica Acta, 92(3): 139-147 (2013).
  • “A Microplate Assay to Assess Chemical Effects of RBL-2H3 Mast Cell Degranulation: Effects of Triclosan Without Use of an Organic Solvent,” Lisa M. Weatherly, Rachel H. Kennedy, Juyoung Shim, and Julie A. Gosse*, Journal of Visualized Experiments, 2013, vol. 81, e50671, doi:10.3791/50671. *corresponding author.
  • “Actin Mediates the Nanoscale Membrane Organization of the Clustered Membrane Protein Influenza Hemagglutinin,” Manasa V. Gudheti, Nikki M. Curthoys, Travis J. Gould, Dahan Kim, Mudalige S. Gunewardene, Kristin A. Gabor, Julie A. Gosse, Carol H. Kim, Joshua Zimmerberg, and Samuel T. Hess, Biophysical Journal, 2013, vol. 104, pp. 2182-2192.
  • “Association between In Utero arsenic exposure, placental gene expression, and infant birth weight: a US birth cohort study,” Dennis Liang Fei, Devin C. Koestler, Zhigang Li, Camilla Giambelli, Avencia Sanchez-Mejias, Julie A. Gosse, Carmen J. Marsit, Margaret R. Karagas, and David J. Robbins, Environmental Health, 2013, vol. 12, p. 58.
  • “Monomethylated Trivalent Arsenic Species Disrupt Steroid Receptor Interactions with their DNA Response Elements at Non-cytotoxic Cellular Concentrations,” Julie A. Gosse, Vivien F. Taylor, Brian P. Jackson, Joshua W. Hamilton, and Jack E. Bodwell, Journal of Applied Toxicology, 2013, doi: 10.1002/jat.2898
  • “Visualizing the molecular timing of a physiological decision at the nanoscale,” Samuel T. Hess* and Julie A. Gosse*, Biophysical Journal, 2013, vol. 105, pp. 2617-8. *co-corresponding authors.

Group toggle arrow2012

  • Young K, Conley B A, Romero D, Tweedie E, O'Neill C F, Pinz I, Brogan L, Lindner V, Liaw L, and Vary C P H: BMP9 Regulates Endoglin-dependent Chemokine Responses in Endothelial Cells. Blood 2012 Nov 15, 120(20):4263-73. PMCID: PMC3501721
  • "Effect of soluble Jagged1-mediated inhibition of Notch signaling on proliferation and differentiation of an adipocyte progenitor cell model", Urs S, Turner B, Tang Y, Rostama B, Small D and Liaw L, Adipocyte 2012 March; 1(1):46-57, PMID: 23700510
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  • **This paper was selected by the Editors as a “Spotlight” article for the May 2012 edition of Infection and Immunity.**
  • *Allen, J.P. and M.N. Neely. CpsY-dependent protection form neutrophil-mediated killing involves modification and stabilization of the Streptococcus iniae cell wall. Infection & Immunity, 80(5):1707-1715. 2012.
  • *Hanson, B.R. and M.N. Neely. Coordinate regulation of Gram-positive cell surface components. Current Opinion in Microbiology, 15:204-210. 2012.
  • *Hanson, B.R., D.L. Runft, *C. Streeter, *A. Kumar, *T.W. Carion and M. N. Neely. Functional analysis of the CpsA protein of Streptococcus agalactiae. Journal of Bacteriology, 194(7):1668-1678. 2012.
  • 10. Meng H, Zhang X, Yu G, Lee SJ, Chen YE, Prudovsky I, Wang MM. Biochemical characterization and cellular effects of CADASIL mutants of NOTCH3. PLoSOne 2012, 7: e44964 PMCID: PMC3445613
  • 11. Kirov A, Maria Duarte M, Guay J, Karolak M, Yan C, Oxburgh L, Prudovsky I. Transgenic expression of nonclassically secreted FGF suppresses kidney repair. PloS One. 2012, 7: e36485. PMCID: PMC3351418
  • 12. Prudovsky I, Vary C, Markaki I, Olins A, Olins D.. Phosphatidylserine co-localizes with epichromatin in interphase nuclei and mitotic chromosomes. Nucleus. 2012, 3:200-210. PMCID: PMC3383575.
  • 13. Danza G, Di Serio C, Rosati F, Lonetto G, Sturli N, Kacer D, Pennella A, Ventimiglia G, Barucci R, Piscazzi A, Prudovsky I, Landriscina M, Marchionni N, Tarantini F. 2012. Notch signaling modulates hypoxia-induced neuroendocrine differentiation of human prostate cancer cells. Mol Cancer Res, 10: 230-238. PMCID: PMC3433043.
  • 14. Kirov A, Al-Hashimi H, Solomon P, Mazur C, Thorpe PE, Sims PJ, Tarantini F, Kumar TK, Prudovsky I. Phosphatidylserine externalization and membrane blebbing are involved in the nonclassical export of FGF1. J Cellular Biochem. 2012, 113:956-66, PMCID: PMC3264788
  • 9. Lopez-Castejon G, Luheshi NM, Compan V, High S, Whitehead RC, Flitsch SL, Kirov A, Prudovsky I, Swanton E, Brough D. Deubiquitinases regulate the activity of caspase-1 and IL-1β secretion via assembly of the inflammasome. J Biol Chem 2012. 288: 2721-2733. PMCID: PMC3554938
  • Alsio, J.M., Tarchini, B., Cayouette, M., and Livesey, F.J. (2013). Ikaros promotes early-born neuronal fates in the cerebral cortex. Proc Natl Acad Sci USA 110, E716-725.
    Read abstract
  • Antibacterial agent triclosan suppresses RBL-2H3 mast cell function, Rachel K. Palmer, Lee M. Hutchinson, Benjamin T. Burpee, Emily J. Tupper, Jonathan H. Pelletier, Zsolt Kormendy, Alex R. Hopke, Ethan T. Malay, Brieana L. Evans, Alejandro Velez, Julie A. Gosse*, Toxicology and Applied Pharmacology, vol. 258, 2012, pp. 99-108. *corresponding author.
  • Antibacterial agent triclosan suppresses RBL-2H3 mast cell function. Rachel K Palmer, Lee M Hutchinson, Benjamin T Burpee, Emily J Tupper, Jonathan H Pelletier, Zsolt Kormendy, Alex R Hopke, Ethan T Malay, Brieana L Evans, Alejandro Velez, Julie A Gosse, Ph.D. Toxicology and Applied Pharmacology, 2012. 258(1). doi: 10.1016/j.taap.2011.10.012
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  • Atul Tiwari, Ravi B. Srivastava, Rajesh K. Saini, Anil K. Bajpai, Lucia H. Innocentini Mei, Shivani B. Mishra, Ashutosh Tiwari, Ashok Kumar, Mohsen Shahinpoor, Golok B. Nando, Subash C. Kundu, and Avrath Chadha, “Biopolymers: An Indispensable Tool for Biotechnology”, Chapter 1 of “Biotechnology in Biopolymers”, Editd by Professors Atul Tiwari and Ravi B. Srivastava, iSmithers-Rapra publishers, London, (2012)
  • Beguin C, Potuzak J, Xu W, Liu-Chen L, Streicher JM, Groer CE, Bohn LM, Carlezon WA, Cohen BM. 2012. Differential signaling properties at the kappa opioid receptor of 12-epi-salvinorin A and its analogues. Bioorganic & Medicinal Chemistry Letters. 22(2):1023-6.
  • Biomechanical ECM Switches and Tumor Metastasis; Signaling Pathways and Molecular Mediators in Metastasis Springer Press 2012
    Authors: Jacquelyn Ames, Calvin Vary, Peter Brooks
  • Borodin PM, Basheva EA, Torgasheva AA, Dashkevich OA, Golenishchev FN, Kartavtseva IV, Mekada K, Dumont BL. (2012) Multiple independent evolutionary losses of XY pairing at meiosis in the grey voles. Chromosome Res. 20:259-268.
  • Boucher J, Gridley T, Liaw L. Molecular pathways of Notch signaling in vascular smooth muscle cells. Frontiers in Physiology, 2012, 3:81. PMCID: PMC3151075
  • Boucher, J., Gridley, T., and Liaw, L. (2012) Molecular pathways of notch signaling in vascular smooth muscle cells. Front Physiol 3, 81
    Read abstract or Download file (PDF)
  • Brothers K.M. and Wheeler R.T. (2012) Non-invasive imaging of zebrafish larvae as a model for disseminated candidiasis. J Vis Exp 30(65):pii 4051.
  • Bruns M, Barth C, Bruener P, Engin S, Grehl T, Howell C, Koelsch P, Mack P, Nagel P, Trouillet V, Wedlich D, White R (2012). Structure and chemical composition of mixed benzylguanine- and methoxy-terminated self-assembled monolayers for immobilization of biomolecules. Surface and Interface Analysis 44, 909-913.
  • Campbell CD, Chong JX, Malig M, Ko A, Dumont BL, Han L, Vives L, O’Roak B, Sudmant P, Abney M, Ober C, Eichler EE. (2012) Estimating human mutation rate using autozygosity in a founder population. Nat Genet 44:1277-1281.
  • Contois L, Nugent DP, Caron JM, Cretu A, Tweedie E, Akalu A, et al. Insulin-Like Growth Factor Binding Protein-4 (IGFBP-4) Differentially Inhibits Growth Factor-Induced Angiogenesis. J Biol Chem. 2012;287(3):1779-89.
    Read abstract
  • Elias, M. F., Goodell, A. L., & Dore, G. A. (2012). Hypertension and cognitive functioning: A perspective in historical context. Hypertension, 60, 260-268.
  • Elias, M. F., Goodell, A. L., & Waldstein S. R. (2012). Obesity, cognitive functioning, and dementia: Back to the future. Journal of Alzheimer’s Disease, 30 (Suppl. 2), S113-S125.
  • Estrogen mimetic 4-tert-octylphenol enhances IgE-mediated degranulation of RBL-2H3 mast cells, Rachel H. Kennedy, Jonathan H. Pelletier, Emily J. Tupper, Lee M. Hutchinson, and Julie A. Gosse*, Journal of Toxicology and Environmental Health, Part A, vol. 75, 2012, pp. 1451-1455. *corresponding author.
  • Estrogen mimetic 4-tert-octylphenol enhances degranulation in RBL mast cells. Rachel H. Kennedy, Jonathon H. Pelletier, Emily J. Tupper, Lee M. Hutchinson, Julie A. Gosse. Journal of Toxicology and Environmental Health, Part A, 75 (24)
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  • Favreau A.J., Cross E., Sathyanarayana, P. 2012. miR-199b-5p directly targets PODXL and DDR1 and decreased levels of miR-199b-5p correlate with elevated expressions of PODXL and DDR1 in Acute Myeloid Leukemia. American Journal of Hematology. 28 FEB 2012 | DOI: 10.1002/ajh.23129
    Read abstract
  • Frankowski KJ, Hedrick MP, Gosalia P, Li K, Shi S, Whipple D, Ghosh P, Prisinzano TE, Schoenen F, Su Y, Vasile S, Sergienko E, Gray W, Hariharan S, Milan L, Heynen-Genel S, Mangravita-Novoc A, Vicchiarelli M, Smith L, Streicher JM, Caron MG, Barak LS, Bohn LM, Chung T, Aube J. 2012. Discovery of Small Molecule Kappa Opioid Receptor Agonist and Antagonist Chemotypes through a HTS and Hit Refinement Strategy. ACS Chemical Neuroscience. 3(3):221-236.
  • Gagnon, G. ; Sanders, N. ; Neivandt, D.J. ; Bousfield, D.W. “The Influence of Dispersant Type and Ion Addition on the Colloidal Chemistry and Rheology of Calcium Carbonate Suspensions”, Proc. 8th International Paper and Coating Chemistry Symposium, 202 (2012)
  • Geyfman M, Kumar V, Liu Q, Ruiz R, Gordon W, Espitia F, Cam E, Millar SE, Smyth P, Ihler A, Takahashi JS, Andersen B. Brain and muscle Arnt-like protein-1 (BMAL1) con- trols circadian cell proliferation and susceptibility to UVB-induced DNA damage in the epidermis. PNAS 109(29):11758-63, 2012.
  • Global Insanity: How Homo sapiens Lost Touch with Reality while Transforming the World. Coffman, J.A. and Mikulecky, D.C. (2012). Emergent Publications (ISBN 9781938158049).
  • Grindrod, C.M. (2012). Effects of left and right hemisphere damage on sensitivity to global context during lexical ambiguity resolution. Aphasiology, 26, 933-952.
  • Harrison, Benjamin J; Flight, Robert M; Eteleeb, Abdallah; Rouchka, Eric C; Petruska, Jeffrey C; RNASeq profiling of UTR expression during neuronal plasticity BMC Bioinformatics 13 Suppl 12 A4 2012 BioMed Central
  • Hastrup A, Howell C, Larsen F, Goodell B, Jellison J (2012). Differences in modification of crystalline cellulose due to degradation by brown and white rot fungi. Fungal Biology, 116, 1052-1063.
  • Hirschman, L, GA Burns, M. Krallinger, C Arighi, KB Cohen, A Valencia, CH Wu, A Chatr-Aryamontri, KG Dowell, E Huala, A Lourenco, R Nash, A Veuthey, T Wiegers, AG Winter (2012) “Text Mining for the BioCuration Workflow.” Database, Vol. 2012: 2012 Apr 18;2012:bas020. doi: 10.1093/database/bas020.
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  • Howell C, Jeyachandran Y, Koelsch P, Zharnikov M (2012). Orientation and ordering in sequence- and length- mismatched surface-bound DNA hybrids. Journal of Physical Chemistry C, 116, 11133-11140.
  • Immunotoxicology: Fifty years of global scientific progress. Susan C. McKarns, Nancy I. Kerkvliet, Jack H. Dean, Michael B. Bonn, Mitchell D. Cohen, Jennifer Franko, Michael D. Laiosa, B. Paige Lawrence, Robert W. Luebke, Michael I. Luster, Patrick G. Miller, Rachel K. Palmer, Jean C. Pfau, Priyadarshini Raman, Jean F. Regal, Kathleen E. Rodgers, Rio S. Schondelmeyer, Xiaochu Zhang, and Leigh Ann Burns-Naas. Journal of Immunotoxicology. doi: 10.3109/1547691X.2012.658530.
  • Jin YR and Yoon JK. The R-spondin family of proteins: Emerging regulators of WNT signaling. Int J Biochem Cell Biol. 44:2278-2287 (2012).
  • Jin YR, Han XH, Taketo MM and Yoon JK. Wnt9b-dependent FGF signaling is crucial for outgrowth of the nasal and maxillary processes during upper jaw and lip development. Development 139:1821-1830 (2012).
  • Kandpal, S.K. ; Allcroft, K. ; Mason, D. ; Bousfield D.W. ; Neivandt D.J. “Laser-Drawn Features on Nanoparticle Films”, Proc. 16th International Coating Science and Technology Symposium, 203 (2012).
  • Kapinas K, Lowther KM, Kessler CB, Tilbury K, Lieberman JR, Tirnauer JS, Campagnola P, Delany AM. “Bone matrix osteonectin limits prostate cance cell growth and survivial.” Matrix Biol. 2012;31(5):299-307.
  • King BL, Davis AP, Rosenstein MC, Wiegers TC, Mattingly CJ. Ranking transitive chemical-disease inferences using local network topology in the comparative toxicogenomics database. PLoS One. 2012;7(11):e46524.
  • Koike N, Yoo SH, Huang HC, Kumar V, Lee C, Kim TK, Takahashi JS. Transcription- al Architecture and Chromatin Landscape of the Core Circadian Clock in Mammals. Science 338(6105): 349-354. 2012.
  • Liu M, Uehara T, Losick VP, Park JT, and Isberg RR. A Legionella pneumophila protein that facilitates evasion from Nod1 recognition. Cell Host Microbe. 2012, Aug 16; 12(2):166-76.
  • M. Lu, D.Ming and J. Ma. (2012) fSUB: Normal Mode Analysis with Flexible Substructures. J. Phys. Chem. B. 116(29): 8636-45
  • M. Shahinpoor, David Soltanpour and Parsa Shahinpoor, “System and Device for Correcting Hyperopia and Presbyopia”, US Patent Office, Patent No. 8, 123,803, Issued February 28, 2012
  • M. Shahinpoor, “Biopolymer/Ionic Polymer Composite Artificial Muscles”, Chapter 10 of “Biotechnology in Biopolymers”, Editd by Professors Atul Tiwari and Ravi B. Srivastava, iSmithers-Rapra publishers, London, (2012)
  • Mohammad, Fahim; Flight, Robert M; Harrison, Benjamin J; Petruska, Jeffrey C; Rouchka, Eric C; AbsIDconvert: An absolute approach for converting genetic identifiers at different granularities BMC bioinformatics 13 1 229 2012 BioMed Central Ltd
  • Morel AP, Hinkal GW, Thomas C, Fauvet F, Courtois-Cox S, Wierinckx A, Devouassoux-Shisheboran M, Treilleux I, Tissier A, Gras B, Pourchet J, Puisieux I, Browne GJ, Spicer DB, Lachuer J, Ansieau S, Puisieux A. EMT inducers catalyze malignant transformation of mammary epithelial cells and drive tumorigenesis towards claudin-low tumors in transgenic mice. PLoS Genet. 2012 May;8(5):e1002723.
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  • P. S. Spinney, D. G. Howitt, R. L. Smith and S. D. Collins, “FABRICATION AND CHARACTERIZATION OF A SOLID -STATE NANOPORE WITH SELF-ALIGNED CARBON NANOELECTRODES FOR MOLECULAR DETECTION”, Nanotechnology, 23(13): 135501 (2012).
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  • PLoS One. 2012;7(5):e36814. doi: 10.1371/journal.pone.0036814.
  • Prudovsky I, Vary CP, Markaki Y, Olins AL, Olins DE. Phosphatidylserine colocalizes with epichromatin in interphase nuclei and mitotic chromosomes. Nucleus. 2012;3:200-210.
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  • Reagan MR, Seib P, Sage E, McMillin D, Janes S, Mitsiades C, Kaplan DL. Cell-Based Anti-Cancer Implant Systems: TRAIL-Mesenchymal Stem Cells and Silk Scaffolds. J Breast Cancer. 2012;15(3):273-82. PMCID: PMC3468780.
  • Reagan, MR and Ghobrial IM. Multiple Myeloma-Mesenchymal Stem Cells: Characterization, Origin, and Tumor-Promoting Effects. Clin Cancer Res. 2012; 18(2):342-9. PMCID: PMC3261316.
  • Ren G, Chen X, Dong F, Li W, Ren X, Zhang Y, Shi Y. Concise review: mesenchymal stem cells and translational medicine: emerging issues. Stem Cells Translational Medicine (invited review). 2012 Jan;1(1):51-8 (Inaugural Issue).
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  • Ren G, Zhao X, Wang Y, Zhang X, Chen X, Xu C, Yuan ZR, Roberts AI, Zhang L, Zheng B, Wen T, Han Y, Rabson AB, Tischfield JA, Shao C, Shi Y. CCR2-Dependent Recruitment of Macrophages by Tumor-Educated Mesenchymal Stromal Cells Promotes Tumor Development and Is Mimicked by TNFalpha. Cell Stem Cell. 2012 Dec 7;11(6):812-24.
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  • Rhythmic Ca(2+) Signaling: Keeping Time with MicroRNAs. Strange K, Yin VP - Curr Biol. 2012 Dec 4;22(23):R1000-1
  • Robbins A, Kurose M, Winterson BJ, Meng ID (2012) Menthol activation of corneal cool cells induces TRPM8-mediated lacrimation but not nociceptive responses in rodents. Invest Ophtahalmol Vis Sci. 53(11): 7034-42.
  • Robbins A, Schmitt D, Winterson BJ, Meng ID (2012) Chronic morphine increases Fos-positive neurons after concurrent cornea and tail stimulation. Headache. 52 (2): 262-73.
  • Ryzhov S., Goldstein A.E., Novitskiy S.V., Blackburn M.R., Biaggioni I., Feoktistov I. Role of A2B adenosine receptors in regulation of paracrine functions of stem cell antigen 1-positive cardiac stromal cells. J Pharmacol Exp Ther. 2012; 341(3):764-774. PMCID: PMC3362889.
  • Scholl C; Weißmüller K; Pavlo Holenya P; Shaked-Rabi M; Tucker K L*; Stefan Wölfl* (2012) Distinct and overlapping gene regulatory networks in BMP- and HDAC-controlled cell fate determination in the embryonic forebrain.
    BMC Genomics 13:298
  • Shi Y*, Su J, Roberts AI, Shou P, Rabson AB, Ren G* (corresponding author). How mesenchymal stem cells interact with tissue immune responses. Trends in Immunology. 2012 Mar;33(3):136-43 (cover story).
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  • Shi Y, Wei L, Wang Y, Ren G. Stem cells deployed for bone repair hijacked by T cells (preview). Cell Stem Cell. 2012 Jan 6;10(1):6-8.
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  • Spender, J. ; Demers, A. ; Xie, X. ; Cline, A.E. ; Earle, M.A. ; Ellis, L.D. ; Neivandt, D.J. “Method for Production of Polymer and Carbon Nanofibers from Water Soluble Polymers”, Nano Letters 12, 3857 (2012)
  • Tarchini, B., Jolicoeur, C., and Cayouette, M. (2012). In vivo evidence for unbiased Ikaros retinal lineages using an Ikaros-Cre mouse line driving clonal recombination. Developmental Dynamics 241, 1973-1985.
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  • Tobin DM, May RC, Wheeler RT. (2012) Zebrafish: a see-through host and a fluorescent toolbox to probe host-pathogen interaction. PLoS Pathog. 2012 Jan;8(1):e1002349. Epub 2012 Jan 5.
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  • Ward C, Ciraulo D, Coulter M, Desjardins S, Liaw L, Peterson S, "Does treatment of split-thickness skin grafts with negative-pressure wound therapy improve tissue markers of wound healing in a porcine experimental model?" J Trauma Acute Care Surg. 2012 Aug;73(2):447-51.
  • Ward, A.B., O. Guvench and R.D. Hills Jr. 2012. Coarse grain lipid-protein molecular interactions and diffusion with MsbA flippase. Proteins 80:2178-90. (Cover article)
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  • White MA, Stubbings M, Dumont BL, Payseur BA. (2012) Genetics and evolution of hybrid male sterility in house mice. Genetics 191:917-934.
  • Willaredt M A; Gorgas K; Gardner H A R; Tucker K L (2012) Mulitple essential roles for primary cilia in heart development.
    Cilia 1:23
  • Y. Bahramzadeh and M. Shahinpoor, “Ionic Polymer-Metal Composites (IPMCs) as Dexterous Manipulators and Tactile Sensors for Minimally Invasive Robotic Surgery”, Proceeding of SPIE 19th Annual International Symposium on Smart Structures and Materials, 11-15 March, 2012, Town & Country Resort and Convention Center, San Diego, California, (2012)
  • Y. Bahramzadeh and M. Shahinpoor, “Modeling of IPMC Guide Wire Stirrer In Endovascular Surgery”, Chapter 2, Electroactivity in Polymeric Materials, Edited by Lenore Rassmussen, Springer Publications, New York, Heidelberg, Dortrecht, London, March (2012)
  • Yoon JK and Lee JS. Cellular signaling and biological functions of R-spondins. Cell. Signal. 24:369-377 (2012).
  • Young K., Conley B.A., Romero D, Tweedie E, O'Neill CF, Pinz I, Brogan L, Lindner V, Liaw L, and Vary CPH. 2012. BMP9 Regulates Endoglin-dependent Chemokine Responses in Endothelial Cells. Blood. 2012;120:4263-4273.
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  • Zhang Y, Roccaro AM, Rombaoa C, Flores L, Obad S, Fernandes SM, Sacco A, Liu Y, Ngo H, Quang P, Azab AK, Azab F, Maiso P, Reagan M, Brown JR, Thai TH, Kauppinen S, Ghobrial IM. LNA-mediated anti-microRNA-155 silencing in low-grade B cell lymphomas. Blood. 2012; 120(8):1678-86. PMID: 22797699

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  • Pinz I, Zhou M, Mende U, Ingwall JS: An Improved Isolation Procedure for Adult Mouse Cardiomyocytes. Cell Biochem Biophys. 2011 Sep;61(1):93-101. PMCID: PMC3249381
  • "RhoA-mediated signaling in Notch-induced senescence-like growth arrest and endothelial barrier dysfunction", Venkatesh D, Fredette N, Rostama B, Tang Y, Vary CP, Liaw L, Urs S, Arteriosclerosis Thrombosis and Vascular Biology 2011 April; 31(4):876-82, PMID: 21273559
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  • "VDR haploinsufficiency impacts body composition and skeletal acquisition in a gender-specific manner", de Paula FJ, Dick-de-Paula I, Bornstein S, Rostama B, Le P, Lotinun S, Baron R, Rosen CJ, Calcified Tissue International 2011 Sept; 89(3):179-91, PMID: 21637996
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  • *Allen, J.P. and M. N. Neely. The Streptococcus iniae transcriptional regulator CpsY is required for protection from neutrophil-mediated killing and proper growth in vitro. Infection & Immunity, 79:4638-48. 2011.
  • *Hanson, B. R.,*B. A. Lowe, M.N. Neely. Membrane topology and DNA-binding ability of the Streptococcal CpsA protein. Journal of Bacteriology. 193:411-420. 2011.
  • 15. Kacer D, McIntire C, Kirov A, Kany E, Roth J, Liaw L, Small D, Friesel R, Basilico C, Tarantini F, Verdi J, Prudovsky I. Regulation of nonclassical FGF1 release and FGF-dependent cell transformation by CBF1-mediated Notch signaling. J Cellular Physiol 2011; 226 :3064-75. PMCID: PMC3126874
  • A.J. McDaid, K.C. Aw, E. Haemmerle, M. Shahinpoor and S.Q. Xie, “ Adaptive Tuning of A 2DOF Controller for Robust Cell Manipulation Using IPMC Actuators”, J. Micromechanics and Microengineering, vol. 21, 125004, pp. 1-11, (2011), Institute of Physics (IOP) Publishing Ltd., London, UK, (2011)
  • Aging redistributes medial prefrontal neuronal excitability and impedes extinction of trace fear conditioning.
    Read abstract
  • Allgeyer, E.S. ; Sterling, S.M. ; Neivandt, D.J. ; Mason, M.D. “Low Axial Drift Stage and Temperature Controlled Liquid Cell for Z-Scan Fluorescence Correlation Spectroscopy In an Inverted Confocal Geometry”, Review of Scientific Instruments 82, 053708 (2011)
  • Bankert RB, Balu-Iyer SV, Odunsi K, Shultz LD, Kelleher RJ, Jr., Barnas JL, Simpson-Abelson M, Parsons R, Yokota SJ. 2011. Humanized mouse model of ovarian cancer recapitulates patient solid tumor progression, ascites formation, and metastasis. PLoS One 6: e24420
  • Bettini V, Maffei P, Pagano C, Romano S, Milan G, Favaretto F, Marshall JD, Paisey R, Scolari F, Greggio NA, Tosetto I, Naggert JK, Sicolo N, Vettor R. 2011. The progression from obesity to type 2 diabetes in Alström syndrome. Pediatr Diabetes:
  • Bidirectional pattern-specific plasticity of the slow afterhyperpolarization in rats: role for high-voltage activated Ca2+ channels and I h.
    Read abstract
  • Boldt K, Mans DA, Won J, van Reeuwijk J, Vogt A, Kinkl N, Letteboer SJ, Hicks WL, Hurd RE, Naggert JK, Texier Y, den Hollander AI, Koenekoop RK, Bennett J, Cremers FP, Gloeckner CJ, Nishina PM, Roepman R, Ueffing M. 2011. Disruption of intraflagellar protein transport in photoreceptor cilia causes Leber congenital amaurosis in humans and mice. J Clin Invest 121: 2169-2180
  • Boucher J, Peterson, S, Urs S, Zhang C, Liaw L, "The miR-143/145 Cluster is a Novel Transcriptional Target of Jag-1/Notch signaling in Vascular Smooth Muscle." J Biol Chem. 2011 Aug 12;286(32):28312-21. Epub 2011 Jun 17.
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  • Boucher J, Peterson, S, Urs S, Zhang C, Liaw L. The miR-143/145 Cluster is a Novel Transcriptional Target of Jag-1/Notch signaling in Vascular Smooth Muscle. J. Biol. Chem. 2011;
    Read abstract or Download file (PDF)
  • Boucher JM, Peterson, SM, Urs S, Zhang C, Liaw L. The miR143/145 cluster is a novel transcriptional target of Jagged-1/Notch signaling in vascular smooth muscle cells. J Biol Chem 2011, 286:28312-28321.
  • Brachmann I; Tucker K L (2011) Organotypic slice culture of GFP-expressing mouse embryos for real-time imaging of peripheral nerve outgrowth.
    J Vis Exp, 49: doi: 10.3791/2309
  • Brothers KM, Newman ZR, Wheeler RT (2011) Live imaging of disseminated candidiasis in zebrafish reveals role of phagocyte oxidase in limiting filamentous growth. Eukaryot Cell. 2011 Jul;10(7):932-44.
    Read abstract
  • Brown AC, Adams DC, de Caestecker M, Yang X, Friesel R, Oxburgh L. FGF/EGF signaling regulates self renewal of renal progenitor cells during embryonic development. Development. 2011;138,5099-5112.
  • Brown AC, Blank U, Adams DC, Karolak MJ, Fetting JL, Hill BL, Oxburgh L. Isolation and culture of cells from the nephrogenic zone of the embryonic mouse kidney. J Vis Exp. 2011 Apr 22;(50).
  • Chalamalasetty RB, Dunty WC Jr, Biris KK, Ajima R, Iacovino M, Beisaw A, Feigenbaum L, Chapman DL, Yoon JK, Kyba M, Yamaguchi TP. The Wnt3a/beta-catenin target gene Mesogenin1 controls the segmentation clock by activating a Notch signalling program. Nat Commun. 2:390 (2011).
  • Connerney J, Spicer DB. Signal transduction pathways and their impairment in syndromic craniosynostosis, in Monographs in Human Genetics. Craniosynostoses: Molecular Genetics, Principles of Diagnosis and Treatment, M. Muenke, H. Collmann, W. Kress, and B.D. Solomon, Editors, Karger. 2011; 28-44.
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  • Dash Y, Ramesh M, Kalyanasundaram R, Munirathinam G, Shultz LD, Rajan TV. 2011. Granuloma formation around filarial larvae triggered by host responses to an excretory/secretory antigen. Infect Immun 79: 838-845
  • Diiorio P, Jurczyk A, Yang C, Racki WJ, Brehm MA, Atkinson MA, Powers AC, Shultz LD, Greiner DL, Bortell R. 2011. Hyperglycemia-Induced Proliferation of Adult Human Beta Cells Engrafted Into Spontaneously Diabetic Immunodeficient NOD-Rag1null IL2rgammanull Ins2Akita Mice. Pancreas 40: 1147-1149
  • Dmitriev A., S.S. Mohapatra, P. Chong, M. Neely, S. Biswas, I. Biswas. CovR-controlled global regulation of gene expression in Streptococcus mutans. PLoS One. 6(5):e20127. 2011.
  • Dorrell C, Grompe MT, Pan FC, Zhong Y, Canaday PS, Shultz LD, Greiner DL, Wright CV, Streeter PR, Grompe M. 2011. Isolation of mouse pancreatic alpha, beta, duct and acinar populations with cell surface markers. Mol Cell Endocrinol 339: 144-150
  • Dostalova, A., Votypka, J., Favreau, A.J., Barbian, K.D., Volf, P., Valenzuela, J.G., and Jochim, R.C. 2011. The midgut transcriptome of Phlebotomus (Larroussius) perniciosus, a vector of Leishmania infantum: comparison of sugar fed and blood fed sand flies. BMC Genomics 12:223.
    Read abstract
  • Dumont BL, Payseur BA. (2011) Evolution of the genomic recombination rate in murid rodents. Genetics 187:643-657.
  • Dumont BL, Payseur BA. (2011) Genetic analysis of genome-scale recombination rate in house mice. PLoS Genetics 7(6): e1002116.
  • Dumont BL, White MA, Steffy B, Wiltshire T, Payseur BA. (2011) Extensive recombination rate variation in the house mouse species complex inferred from genetic linkage maps. Genome Res. 21:114-125.
  • Duy, W.B. ; Hackett, B. ; Mlsna, T. ; Vetlino, J.F. ; Neivandt D.J. “Detection of Peroxide Based Explosives Utilizing a Lateral Field Excited Acoustic Wave Sensor”, Sensor Letters 9, 910 (2011)
  • Favreau AJ, Sathyanarayana P. miR-590-5p, miR-219-5p, miR-15b and miR-628-5p are commonly regulated by IL-3, GM-CSF and G-CSF in acute myeloid leukemia. Leuk Res (2011), doi:10.1016/j.leukres.2011.09.027
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  • Flaherty JP, Fairfield HE, Spruce CA, McCarty CM, Bergstrom DE. 2011. Molecular characterization of an allelic series of mutations in the mouse Nox3 gene. Mamm Genome 22(3-4):156-69. PMCID: PMC3056917
    Read abstract
  • Flight, Robert M; Petruska, Jeffrey C; Harrison, Benjamin J; Rouchka, Eric C; categoryCompare: high-throughput data meta-analysis using gene annotations BMC Bioinformatics 12 7 A16 2011 BioMed Central
  • Foreman O, Kavirayani AM, Griffey SM, Reader R, Shultz LD. 2011. Opportunistic bacterial infections in breeding colonies of the NSG mouse strain. Vet Pathol 48: 495-499
  • Guzzo R, Andreeva V, Spicer DB*, and Drissi H*. Persistent expression of Twist1 in chondrocytes causes growth plate abnormalities and dwarfism in mice. J Int Dev Biol. 2011; 55:641-7. *equal contribution.
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  • Hageman RS, Leduc MS, Caputo C, Tsaih SW, Churchill GA, Korstanje R (2011) Uncovering Genes and Regulatory Pathways Related to Urinary Albumin Excretion in Mice. Journal of the American Society of Nephrology 22(1):73-81.
  • Han XH, Jin YR, Seto M, Yoon JK. A WNT/{beta}-catenin signaling activator, R-spondin, plays positive regulatory roles during skeletal myogenesis. J Biol Chem. 286:10649-59 (2011).
  • Hastrup A, Howell C, Jensen B, Green F (2011). Non-enzymatic depolymerization of cotton cellulose by fungal mimicking metabolites. International Biodeterioration and Biodegradation 65, 553–559.
  • Hedrick MP, Gosalia P, Li K, Frankowski KJ, Shi S, Prisinzano TE, Schoenen F, Aubé J, Su Y, Stonich D, Vasile S, Sergienko E, Gray W, Hariharan S, Milan L, Heynen-Genel S, Vicchiarelli M, Mangravita-Novo A, Streicher JM, Smith LH, Chung TDY, Caron M, Bohn LM, Barak LS. 2011. Antagonist for the Kappa Opioid Receptor. NIH Molecular Libraries Program.
  • Howell C, Hamoudi H, Koelsch P, Zharnikov M (2011). Orientation changes in surface-bound hybridized DNA undergoing preparation for ex situ spectroscopic measurements. Chemical Physics Letters 513, 267-270.
  • Howell C, Hastrup A, Jara R, Larsen F, Goodell B, Jellison J (2011). Changes in wood crystalline cellulose structure caused by hot-water extraction and brown-rot decay. Cellulose 18, 1179-1190.
  • Howell C, Zhao J, Koelsch P, Zharnikov M (2011). Hybridization in ssDNA films- a multi-technique spectroscopy study. Physical Chemistry Chemical Physics 13, 15512-15522.
  • Information as a manifestation of development. Coffman, J.A. (2011). Information 2 (1): 102-116.
  • Inorganic Arsenite Inhibits IgE Receptor-Mediated Degranulation of Mast Cells, Lee M. Hutchinson, Benett M. Trinh, Rachel K. Palmer, Christopher A. Preziosi, Jonathan H. Pelletier, Hannah M. Nelson, Julie A. Gosse*, Journal of Applied Toxicology, vol. 31, 2011, pp. 231-241. *corresponding author.
  • Inorganic Arsenite Inhibits IgE Receptor-Mediated Degranulation of Mast Cells, Lee M. Hutchinson, Benett M. Trinh, Rachel K. Palmer, Christopher A. Preziosi, Jonathan H. Pelletier, Hannah M. Nelson, Julie A. Gosse, Journal of Applied Toxicology, 2011, 31: 231-241. doi: 10.1002/jat.1585
  • Jagger D, Collin G, Kelly J, Towers E, Nevill G, Longo-Guess C, Benson J, Halsey K, Dolan D, Marshall J, Naggert J, Forge A. 2011. Alström Syndrome protein ALMS1 localizes to basal bodies of cochlear hair cells and regulates cilium-dependent planar cell polarity. Hum Mol Genet 20: 466-481
  • Jin YR, Turcotte TJ, Crocker AL, Han XH, Yoon JK. The canonical Wnt signaling activator, R-spondin2, regulates craniofacial patterning and morphogenesis within the branchial arch through ectodermal-mesenchymal interaction. Dev Biol. 352:1-13 (2011).
  • King BL, Gillis JA, Carlisle HR, Dahn RD. (2011) A natural deletion of the HoxC cluster in elasmobranch fishes. Science, 334(6062):1517. Reviewed in Research Highlights Nature 480(22/29): 419, 2011.
  • Knowles CJ, Dionne M, Cebova M, Pinz IM. Palmitate-Induced Translocation of Caveolin-3 and Endothelial Nitric Oxide Synthase in Cardiomyocytes. Online J Biol Sci. 2011;11(2):27-36.
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  • Knowles CJ, Dionne M, Cebova M, Pinz IM: Palmitate-induced Translocation of Caveolin-3 and eNOS in Cardiomyocytes. Online J Biol Sci. 2011;11(2):27-36. PMCID: PMC3175373
  • Kumar V, Kim K, Joseph C, Thomas LC, Hong HK, and Takahashi JS. A Second Gen- eration High Throughput Forward Genetic Screen in Mice to Isolate Subtle Behavioral Mutants. PNAS 108: Sup 3 15557-15564. 2011.
  • Lee Y, Smith RS, Jordan W, King BL, Won J, Valpuesta JM, Naggert JK, Nishina PM. 2011. Prefoldin 5 is required for normal sensory and neuronal development in a murine model. J Biol Chem 286: 726-736
  • Life span extension via eIF4G inhibition is mediated by posttranscriptional remodeling of stress response gene expression in C. elegans. Rogers AN, Chen D, McColl G, Czerwieniec G, Felkey K, Gibson BW, Hubbard A, Melov S, Lithgow GJ, Kapahi P - Cell Metab. 2011 Jul 6;14(1):55-66
  • Liu G, Dou S, Cheng D, Leif J, Rusckowski M, Streeter PR, Shultz LD, Hnatowich DJ, Greiner DL. 2011. Human islet cell MORF/cMORF pretargeting in a xenogeneic murine transplant model. Mol Pharm 8: 767-773
  • Localization-Based Super-Resolution Light Microscopy.

    Kristin A. Gabor, Mudalige S. Gunewardene, David Santucci, Samuel T. Hess
    Microscopy Today, Volume19, Issue 04 Jul 2011, pp 12 - 16
    Download file (PDF)
  • Losick VP, Morris LX, Fox DT, Spradling A. Drosophila stem cell niches: a decade of discovery suggest a unified view of stem cell regulation. Developmental Cell. 2011, Jul 19; 21(1):159-71. Review.
  • Lowery J, Raymond T, Giuvelis D, Bidlack J, Polt R, Bilsky E (2011). In vivo characterization of MMP-2200, a mixed delta/mu opioid agonist, in mice. J Pharmacol Exp Ther 336(3):767-778.
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  • M. Lu and J. Ma. (2011) Normal mode analysis with molecular geometry restraints: Bridging molecular mechanics and elastic models. Arch. Biochem. Biophys. 508 (1): 64-71
  • M. Shahinpoor, ” Artificial Muscles”, in Journal of Smart Materials and Structures, Special; Issue on “Artificial Muscles”, Volume 20, Number 12, pp-1-3, December 2011
  • Maddox DM, Hicks WL, Vollrath D, LaVail MM, Naggert JK, Nishina PM. 2011. An ENU-induced mutation in the Mertk gene (Mertknmf12) leads to a slow form of retinal degeneration. Invest Ophthalmol Vis Sci 52: 4703-4709
  • Markowski, V.P., Currie, D., Reeve, E.A., Thompson, W.D. and Wise, Sr., J.P. Tissue-Specific and Dose-Related Accumulation of Arsenic in Mouse Offspring Following Maternal Consumption of Arsenic-Contaminated Water. Basic & Clinical Pharmacology & Toxicology 108: 326-332, 2011.
  • Mathers A, Smith RP, Cahill B, Lubelczyk C, Elias SP, Lacombe E, Morris SR, Vary CP, Parent CE, Rand PW. Strain diversity of Borrelia burgdorferi in ticks dispersed in North America by migratory birds. J Vector Ecol. 2011;36(1):24-9.
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  • Mechanisms underlying basal and learning-related intrinsic excitability in a mouse model of Alzheimer's disease.
    Read abstract
  • Milligan-Myhre K., Charette J.R., Phennicie R.T., Stephens W.Z., Rawls J..F, Guillemin K., Kim C.H. Study of host-microbe interactions in zebrafish. Methods Cell Biol 105: 87-116.
  • Mohammad, Fahim; Flight, Robert M; Harrison, Benjamin J; Petruska, Jeffrey C; Rouchka, Eric C; 2011 11th IEEE International Conference on Bioinformatics and Bioengineering BIBE 2011
  • Mohammad, Fahim; Flight, Robert M; Harrison, Benjamin J; Petruska, Jeffrey C; Rouchka, Eric C; A Heuristic Algorithm for Detecting Intercellular Interactions Bioinformatics and Bioengineering (BIBE), 2011 IEEE 11th International Conference on 8-Jan 2011 IEEE
  • Mohammad, Fahim; Flight, Robert M; Harrison, Benjamin J; Petruska, Jeffrey C; Rouchka, Eric C; Interval Trees for Detection of Overlapping Genetic Entities Bioinformatics and Bioengineering (BIBE), 2011 IEEE 11th International Conference on 278-281 2011 IEEE
  • Mohsen Shahinpoor, “Biomimetic Robotic Venus flytrap (Dionaea Muscipula Ellis) Made with Ionic Polymer Metal Composites (IPMCs)”, Bioinspiration and Biomimetics, vol. 6, 046004, pp. 1-11, (2011), Institute of Physics (IOP) Publishing Ltd., London, UK, (2011)
  • Mohsen Shahinpoor, “Surgical Correction of Hyperopia, Myopia and Presbyopia Review of Recent Ophthalmological Patents”, “Recent Patents on Biomedical Engineering Journal”, volume 4, pp. 185-195, (2011), Bentham Science Publishers Ltd., Oak Park, IL 60301-0446, USA, (2011)
  • Nodal-mediated epigenesis requires dynamin-mediated endocytosis. Ertl, R.P., Robertson, A.J., Saunders, D., and Coffman, J.A. (2011). Dev. Dyn. 240: 704-711.
  • Numata K, Reagan MR, Goldstein RH, Rosenblatt M, Kaplan DL. Spider Silk-Based Gene Carriers for Tumor Cell-Specific Delivery. Bioconjug Chem. 2011;22(8):1605-10. PMCID: PMC3157559.
  • Oporto, G. S. ; Gardner, D. J. ; Kiziltas, A. ; Neivandt, D. J. “Understanding the Affinity Between Components of Wood-Plastic Composites from a Surface Energy Perspective”, Journal of Adhesion Science and Technology 25, 1785 (2011)
  • Oxburgh L, Brown AC, Fetting J, Hill B. BMP signaling in the nephron progenitor niche. Pediatr Nephrol. 2011 Mar 4.
  • Oxygen, pH, and oral-aboral axis specification in the sea urchin embryo. Coluccio, A.E., LaCasse, T.J., and Coffman, J.A. (2011). Mol. Rep. & Dev. 78: 68.
  • O’Brien GS, Rieger S, Wang F, Smolen GA, Gonzalez RE, Buchanan J and Sagasti A: Coordinate development of skin cells and cutaneous sensory axons in zebrafish. J Comp Neurol. 2011 Oct 20. doi: 10.1002/cne.22791. [Epub ahead of print]
  • Pereiro I, Hoskins BE, Marshall JD, Collin GB, Naggert JK, Pineiro-Gallego T, Oitmaa E, Katsanis N, Valverde D, Beales PL. 2011. Arrayed primer extension technology simplifies mutation detection in Bardet-Biedl and Alström syndrome. Eur J Hum Genet 19: 485-488
  • Pinz I, Tian R, Belke D, Swanson E, Dillmann W, Ingwall JS: Compromised Myocardial Energetics in Hypertrophied Mouse Hearts Diminish the Beneficial Effect of Overexpressing SERCA2a. J. Biol. Chem. 2011 Mar 25;286(12):10163-8. PMCID: PMC3060468
  • R. Glaser, V. Caccese and M. Shahinpoor, “Development of Magnetorheological Fluid Composites with Rigidification Characteristics”, Smart Materials and Structures Journal, volume 20, no.4, o45018 (16pp), pp. 1-16, (2011)
  • R. Glaser, V. Caccese and M. Shahinpoor, “Shape Monitoring of a Beam Structure from Measured Strain or Curvature”, Int. Journal of Experimental Mechanics, Springer Publishing Company, (2011) vol. 51, no. , pp. – , (2011)
  • Reagan MR, Kaplan DL. Concise review: Mesenchymal stem cell tumor-homing: detection methods in disease model systems. Stem Cells. 2011; 29(6):920-7. PMID: 21557390.
  • Rech, R.H., Briggs, S.L. and Mokler, D.J. Fentanyl and spiradoline interactions in a place-conditioning black-white shuttle-box. Pharmaceuticals 4: 101-116, 2011.
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  • Reynolds J, Bilsky EJ, Meng ID (2011) Selective ablation of mu-opioid receptor expressing neurons in the rostral ventromedial medulla attenuates stress-induced mechanical hypersensitivity. Life Sci. 89(9-10): 313-9.
  • Rhythmic intrinsic bursting neurons in human neocortex obtained from pediatric patients with epilepsy.
    Read abstract
  • Rieger S, Sagasti A Hydrogen Peroxide Promotes Injury-Induced Peripheral Sensory Axon Regeneration in the Zebrafish Skin. PLoS Biol 9 (5) 2011.
  • Rieger S, Wang F, Sagasti A: Zebrafish time-lapse imaging during nervous system development. Genesis. Feb 8, 2011.
  • Romero D, O’Neill C, Terzic A, Contois L, Young K, Conley BA, Bergan RC, Brooks PC, Vary CPH. Endoglin regulates cancer-stromal cell interactions in prostate tumors. Cancer Research: 2011; 71(10); 3482–3493.
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  • Ryzhov S, Novitskiy SV, Goldstein AE, Biktasova A, Blackburn MR, Biaggioni I, Dikov MM, Feoktistov I. Adenosinergic Regulation of the Expansion and Immunosuppressive Activity of CD11b+Gr1+ Cells. J Iimmunol. 2011; 187(11):6120-6129. PMCID: PMC3221925.
  • S.D. Dvorak and M. Shahinpoor, “A New Membrane Electrode Assembly for Low-Temperature PEM Fuel Cells Having a Nanocomposite Catalyst Layer,” Electrochemical Society (ECS) Transactions, vol. 30, No.1, pp. 77- 82, (2011)
  • Schleifman EB, Bindra R, Leif J, Del Campo J, Rogers FA, Uchil P, Kutsch O, Shultz LD, Kumar P, Greiner DL, Glazer PM. 2011. Targeted Disruption of the CCR5 Gene in Human Hematopoietic Stem Cells Stimulated by Peptide Nucleic Acids. Chem Biol 18: 1189-1198
  • Schreiner S, Hatch A, Shudy D, Howard D, Howell C, Zhao J, Koelsch P, Zharnikov M, Petrovykh D, Opdahl A (2011). Impact of DNA-surface interactions on the stability of DNA hybrids. Analytical Chemistry 83, 4288-4295.
  • Sinke A, Caputo C, Tsaih S, Yuan R, Ren D, Deen P, Korstanje R (2011) Genetic analysis of plasma sodium concentration in mice and identification of Nalcn, a novel player in osmoregulation. Physiological Genomics 43(5):265-270
  • Staiti, A.M., Morgane, P.J., Galler, J.R., Grivetti, J.Y., Bass, D.C., and Mokler, D.J. A microdialysis study of the medial prefrontal cortex of adolescent and adult rats. Neuropharmacology 61(3), 544-549, 2011.
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  • Tang Y, Yang X, Friesel RE, Vary CPH, Liaw L. Mechanisms of TGFbeta induced differentiation in human vascular smooth muscle cells. J Vasc Res 2011, 48:485-494.
  • Tang Y, Yang X, Friesel RE, Vary CPH, and Liaw L. Mechanisms of TGF? Induced Differentiation in Human Vascular Smooth Muscle Cells. J. Vascular Research. 2011; 48:485–494.
    Read abstract
  • Tarselli MA, Raehal KM, Brasher AK, Streicher JM, Groer CE, Bohn LM and Micalizio GC. 2011. Synthesis of conolidine and discovery of a potent non-opioid analgesic for tonic and persistent pain. Nature Chemistry. 3(6):449-53.
  • Taskesen M, Collin GB, Evsikov AV, Guzel A, Ozgul RK, Marshall JD, Naggert JK. 2011. Novel Alu retrotransposon insertion leading to Alström syndrome. Hum Genet:
  • Transition. Dis. Model Mech 2011; 4(4): 469-483 PMCID: PMC3124051.
  • Updike, D.L., Hachey, S.J., Kreher, J., Strome, S. (2011) P granules extend the nuclear pore complex environment in the C. elegans germ line. J Cell Biol. 192(6):939-948.
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  • Urs S, Henderson T, Le P, Rosen CJ, Liaw L. Tissue specific expression of Sprouty1 in mice protects against high fat diet induced fat accumulation, bone loss, and metabolic dysfunction. Br J Nutrition 2011, 6:1-9.
  • Venkatesh D, Fredette N, Rostama B, Tang Y, Vary CP, Liaw L, Urs S. RhoA-mediated signaling in Notch-induced senescence-like growth arrest and endothelial barrier dysfunction. Arterioscler Thromb Vasc Biol. 2011, 31:876-882
  • Venkatesh D, Fredette N, Rostama B, Tang Y, Vary CPH, Liaw L and Urs S. RhoA mediated signaling in Notch-induced senescence like growth arrest and endothelial barrier dysfunction. Arterioscler Thromb Vasc Biol. 2011;31(4):876-882.
    Read abstract
  • Whitfield-Larry F, Young EF, Talmage G, Fudge E, Azam A, Patel S, Largay J, Byrd W, Buse J, Calikoglu AS, Shultz LD, Frelinger JA. 2011. HLA-A2-matched peripheral blood mononuclear cells from type 1 diabetic patients, but not nondiabetic donors, transfer insulitis to NOD-scid/gammac(null)/HLA-A2 transgenic mice concurrent with the expansion of islet-specific CD8+ T cells. Diabetes 60: 1726-1733
  • Wise, Sr., J.P., Wise, S.S., LaCerte, C. and Aboueissa, A. The Genotoxicity of Particulate and Soluble Chromate in Sperm Whale (Physeter macrocephalus) Skin Fibroblasts. Environmental and Molecular Mutagenesis 52: 43-49, 2011.
  • Won J, Marin de Evsikova C, Smith RS, Hicks WL, Edwards MM, Longo-Guess C, Li T, Naggert JK, Nishina PM. 2011. NPHP4 is necessary for normal photoreceptor ribbon synapse maintenance and outer segment formation, and for sperm development. Hum Mol Genet 20: 482-496
  • Won J, Shi LY, Hicks W, Wang J, Hurd R, Naggert JK, Chang B, Nishina PM. 2011. Mouse model resources for vision research. J Ophthalmol 2011: 391384
  • Y. Bahramzadeh and M. Shahinpoor, “Dynamic Curvature Sensing Based On Ionic Polymer-Metal Composite (IPMC) Sensors”, Smart Materials and Structures Journal, vol. 20, no. 5, 094011, (7pp), September (2011)
  • Zhao L, Spassieva SD, Jucius TJ, Shultz LD, Shick HE, Macklin WB, Hannun YA, Obeid LM, Ackerman SL. 2011. A deficiency of ceramide biosynthesis causes cerebellar purkinje cell neurodegeneration and lipofuscin accumulation. PLoS Genet 7: e1002063
  • Zulato E, Favaretto F, Veronese C, Campanaro S, Marshall JD, Romano S, Cabrelle A, Collin GB, Zavan B, Belloni AS, Rampazzo E, Naggert JK, Abatangelo G, Sicolo N, Maffei P, Milan G, Vettor R. 2011. ALMS1-deficient fibroblasts over-express extra-cellular matrix components, display cell cycle delay and are resistant to apoptosis. PLoS One 6: e19081

Group toggle arrow2010

  • Devlin MJ, Cloutier AM, Thomas NA, Panus DA, Lotinun S, Pinz I, Baron R, Rosen CJ, Bouxsein ML. Caloric restriction leads to high marrow adiposity and low bone mass in growing mice. J Bone Miner Res. 2010 Sep; 25(9):2078-88, PMCID: PMC3127399
  • Yang X, Kilgallen S, Andreeva V, Spicer DB, Pinz I, Friesel R. Conditional expression of Spry1 in neural crest causes craniofacial and cardiac defects. BMC Dev Biol. 2010 May 11;10(1):48. PMCID: PMC2874773
  • "Inhibition of Nitric Oxide (NO) Production in Lipopolysaccharide (LPS)-Activated Murine Macrophage RAW 264.7 Cells by the Norsesterterpene Peroxide, Epimuqubilin A", Cheenpracha S, Park EJ, Rostama B, Pezzuto JM, Chang LC, Marine Drugs 2010 March; 8(3):429-437, PMID: 20411107
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  • *Allen, J.P. and M.N. Neely. Trolling for the ideal model host: Zebrafish take the bait. Future Microbiology, 5(4):563-569. 2010.
  • 16. Massi D, Landriscina M, Piscazzi A, Cosci E, Kirov A, Paglierani M, Di Serio C, Mourmouras V, Fumagalli S, Biagioli M, Prudovsky I, Miracco C, Santucci M, Marchionni N, Tarantini F.. S100A13 is a new angiogenic marker in human melanoma. Modern Pathology. 2010, 23: 804-813. PMCID: PMC2882157
  • 2010 R.L. Smith, C. J. Demers, and S.D. Collins, Microfluidic device for the combinatorial application and maintenance of dynamically imposed diffusional gradients, Journal Microfluidics and Nanofluidics ISSN 1613-4982 (Print) 1613-4990 (Online)
  • Activation of Hedgehog Signaling by the Environmental Toxicant Arsenic May Contribute to the Etiology of Arsenic-Induced Tumors, Dennis Liang Fei, Hua Li, Courtney D. Kozul, Kendall E. Black, Samer Singh, Julie A. Gosse, James DiRenzo, Kathleen A. Martin, Baolin Wang, Joshua W. Hamilton, Margaret R. Karagas, and David J. Robbins, Cancer Research, vol. 70, 2010, pp. 1981-8.
  • Brehm MA, Bortell R, Diiorio P, Leif J, Laning J, Cuthbert A, Yang C, Herlihy M, Burzenski L, Gott B, Foreman O, Powers AC, Greiner DL, Shultz LD. 2010. Human immune system development and rejection of human islet allografts in spontaneously diabetic NOD-Rag1null IL2rgammanull Ins2Akita mice. Diabetes 59: 2265-2270
  • Brehm MA, Cuthbert A, Yang C, Miller DM, DiIorio P, Laning J, Burzenski L, Gott B, Foreman O, Kavirayani A, Herlihy M, Rossini AA, Shultz LD, Greiner DL. 2010. Parameters for establishing humanized mouse models to study human immunity: analysis of human hematopoietic stem cell engraftment in three immunodeficient strains of mice bearing the IL2rgamma(null) mutation. Clin Immunol 135: 84-98
  • Brehm MA, Shultz LD, Greiner DL. 2010. Humanized mouse models to study human diseases. Curr Opin Endocrinol Diabetes Obes 17: 120-125
  • Browning, C.L., R.M. Rolland and S.D. Kraus. 2010. Estimated calf and perinatal mortality in western North Atlantic right whales. Marine Mammal Science 26(3): 648-662.
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  • Budzynski E, Gross AK, McAlear SD, Peachey NS, Shukla M, He F, Edwards M, Won J, Hicks WL, Wensel TG, Naggert JK, Nishina PM. 2010. Mutations of the opsin gene (Y102H and I307N) lead to light-induced degeneration of photoreceptors and constitutive activation of phototransduction in mice. J Biol Chem 285: 14521-14533
  • Burman, M.A., Hamilton, K.L., & Gewirtz, J.C. (2010). The Role of Corticosterone in Trace and Delay Conditioned Fear-Potentiated Startle in Rats. Behavioral Neuroscience. 24(2):294-9
  • C. J. Demers, R. L. Smith and S. D. Collins, GRADIENT GENERATOR WITH DYNAMIC CONTROL, Microfluidics and Nanofluidics, 9(4-5), 613-622 (2010).
  • Calvo, E., Sanchez-Vargas, I., Favreau, A.J., Barbian, K.D., Pham, V.M., Olson, K.E., and Ribeiro, J.M. 2010. An insight into the sialotranscriptome of the West Nile mosquito vector, Culex tarsalis. BMC Genomics 11:51.
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  • Calvo, E., Sanchez-Vargas, I., Kotsyfakis, M., Favreau, A.J., Barbian, K.D., Pham, V.M., Olson, K.E., and Ribeiro, J.M. 2010. The salivary gland transcriptome of the eastern tree hole mosquito, Ochlerotatus triseriatus. J Med Entomol 47:376-386.
    Read abstract
  • Chakraborty S, Wirrig EE, Hinton RB, Merrill WH, Spicer DB, Yutzey KE. Twist1 promotes heart valve cell proliferation and extracellular matrix gene expression during development in vivo and is expressed in human diseased aortic valves. Dev Biol. 2010;34(1)7:167-79.
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  • Chase TH, Lyons BL, Bronson RT, Foreman O, Donahue LR, Burzenski LM, Gott B, Lane P, Harris B, Ceglarek U, Thiery J, Wittenburg H, Thon JN, Italiano JE, Jr., Johnson KR, Shultz LD. 2010. The mouse mutation "thrombocytopenia and cardiomyopathy" (trac) disrupts Abcg5: a spontaneous single gene model for human hereditary phytosterolemia/sitosterolemia. Blood 115: 1267-1276
  • Choi SB, Kim JU, Joo H, Min CK. Identification and characterization of a novel bacterial ATP-sensitive K+ channel. J Microbiol. 2010;48(3):325-30
  • Cold Spring Harb Protoc. 2010 Jan;2010(1):pdb.prot5367. doi: 10.1101/pdb.prot5367. No abstract available.
  • Cox A, Sheehan S, Kloting I, Paigen B, Korstanje R (2010) Combining QTL Data for HDL Cholesterol Levels from Two Different Species Leads to Smaller Confidence Intervals. Heredity (in press)
  • De Felice M, Ossipov MH, Wang R, Dussor G, Lai J, Meng ID, Chichorro J, Andrews JS, Rakhit S, Maddaford S, Dodick D Porreca F (2010) Triptan-induced enhancement of neuronal nitric oxide synthase in trigeminal ganglion dural afferents underlies increased responsiveness to potential migraine triggers. Brain. 133(Pt 8): 2475-88.
  • De Felice M, Ossipov MH, Wang R, Lai J, Chichorro JG, Meng I, Dodick DW, Vanderah TW, Dussor G, Porreca F (2010) Triptan-induced latent sensitization: A possible basis for medication overuse headache. Annals of Neurology. 67(3): 325-37.
  • Diesner M, Howell C, Kurz V, Verreault D, Koelsch P (2010). In vitro characterization of surface properties through living cells. Journal of Physical Chemistry Letters 1, 2339–2342.
  • Drews O, Tsukamoto O, Liem D, Streicher J, Wang Y, Ping P. 2010. Differential Regulation of Proteasome Function in Isoproterenol-Induced Cardiac Hypertrophy. Circulation Research. 107(9):1094-1101.
  • Duncan, J.R., Paterson, D.S., Hoffman, J.M., Mokler, D.J., Borestein, N.S., Belliveau, R.A., Krous, H.F., Haas, E.A., Stanley, C., Nattie, E.E., Trachtenberg, F.L. and Kinney, H.C. Brainstem serotonergic deficiency in the sudden infant death syndrome. Journal of the American Medical Association, 303 (5): 430-437, 2010.
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  • Edwards MM, Mammadova-Bach E, Alpy F, Klein A, Hicks WL, Roux M, Simon-Assmann P, Smith RS, Orend G, Wu J, Peachey NS, Naggert JK, Lefebvre O, Nishina PM. 2010. Mutations in Lama1 disrupt retinal vascular development and inner limiting membrane formation. J Biol Chem 285: 7697-7711
  • Edwards MM, Marin de Evsikova C, Collin GB, Gifford E, Wu J, Hicks WL, Whiting C, Varvel NH, Maphis N, Lamb BT, Naggert JK, Nishina PM, Peachey NS. 2010. Photoreceptor degeneration, azoospermia, leukoencephalopathy, and abnormal RPE cell function in mice expressing an early stop mutation in CLCN2. Invest Ophthalmol Vis Sci 51: 3264-3272
  • Foster, J. A., Burman, M.A. (2010). Evidence for Hippocampus-Dependent Contextual Learning at Postnatal Day 17 in the Rat. Learning and Memory. 17(5):259-66
  • Francischetti, I.M., Calvo, E., Andersen, J.F., Pham, V.M., Favreau, A.J., Barbian, K.D., Romero, A., Valenzuela, J.G., and Ribeiro, J.M. 2010. Insight into the Sialome of the Bed Bug, Cimex lectularius. J Proteome Res 9:3820-3831.
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  • Garret M, Pezzolesi M, Korstanje R (2010) Integrating human, rat, and mouse data to identify the genetic factors involved in chronic kidney disease. JASN 21(3):398-405.
  • Garrido-Martin EM, Blanco FJ, Fernandez-L A, Vary CP, Lee U, Friedman SL, Botella LM, Bernabeu C. Characterization of the human Activin-A receptor type II-like kinase 1 (ACVRL1) promoter and its regulation
    by Sp1. BMC Mol Biol. 2010;11(1):51. PMCID: 2906440.
    Read abstract
  • Goldstein RH*, Reagan MR*, Anderson K, Kaplan DL, and Rosenblatt M. Human bone marrow-derived MSCs can home to orthotopic breast cancer tumors and can promote bone metastasis. *Co-first authorship. Cancer Res. 2010; 70(24):10044-50. PMCID: PMC3017423.
  • Goody, M.F., et al., Nrk2b-mediated NAD+ production regulates cell adhesion and is required for muscle
    morphogenesis in vivo, Dev. Biol. (2010), doi:10.1016/j.ydbio.2010.05.513
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  • Goody, MF, Kelly, MW, Lessard, KN, Khalil, A, Henry, CA 2010. Nrk2b-Mediated NAD+ Production Regulates Cell Adhesion and is Required for Muscle Morphogenesis in vivo, Developmental Biology, 344, 809-826.
  • Goody, MF, MW Kelly, KN Lessard, A Khalil, CA Henry. (2010). Nrk2b-mediated NAD+ production regulates cell adhesion and is required for muscle morphogenesis in vivo, Dev. Biol (2): 809-26.
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  • Goody, Michelle F. and Clarissa A. Henry. 2010. Dynamic interactions between cells and their extracellular matrix mediate embryonic development. Mol. Reprod. Dev. 77: 475-488, 2010.
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  • Gori JL, Tian X, Swanson D, Gunther R, Shultz LD, McIvor RS, Kaufman DS. 2010. In vivo selection of human embryonic stem cell-derived cells expressing methotrexate-resistant dihydrofolate reductase. Gene Ther 17: 238-249
  • Grant, J, Verrill, C, Coustham, V, Arneodo, A, Palladino, F, Monier, K, Khalil, A. Perinuclear distribution of heterochromatin in developing C. elegans embryos, Chromosome Research, (2010) submitted.
  • Hasham MG, Donghia NM, Coffey E, Maynard J, Snow KJ, Ames J, Wilpan RY, He Y, King BL, Mills KD: Widespread genomic breaks generated by activation-induced cytidine deaminase are prevented by homologous recombination. Nat Immunol 2010.
  • Hasham, M.G., Donghia, N.M., Coffey, E., Maynard, J., Snow, K.J., Ames, J., Wilpan, R.Y., He, Y., King, B.L., Mills K.D. (2010) Widespread genomic breaks generated by activation-induced cytidine deaminase are prevented by homologous recombination. Nature Immunology 11: 820-826

    Read abstract
  • Hill, Caitlin E; Harrison, Benjamin J; Rau, Kris K; Hougland, M Tyler; Bunge, Mary Bartlett; Mendell, Lorne M; Petruska, Jeffrey C; Skin incision induces expression of axonal regeneration-related genes in adult rat spinal sensory neurons The Journal of Pain 11 11 1066-1073 2010 Elsevier
  • Hills Jr., R.D., L. Lu and G.A. Voth. 2010. Multiscale coarse-graining of the protein energy landscape. PLoS Comput. Biol. 6:e1000827.
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  • Hirata H, Meng ID (2010) Cold-sensitive corneal afferents respond to a variety of ocular stimuli central to tear production: implications for dry eye disease. Invest Ophthalmol Vis Sci. 51(8):3969-76.
  • Holmes, A.L. and Wise, Sr., J.P. Mechanisms of Metal-Induced Centrosome Amplification. Biochemical Society Transactions 38(6): 1687-1690, 2010.
  • Holmes, A.L. and Wise, Sr., J.P. Mechanisms of Metal-Induced Centrosome Amplification. Biochemical Society Transactions, 38(6): 1687-1690, 2010.
  • Holmes, A.L., Wise, S.S., Pelsue, S.C., Aboueissa, A., Lingle, W., Salisbury, S., Gallaher, J. and Wise, Sr., J.P. Chronic Exposure to Zinc Chromate Induces Centrosome Amplification and Spindle Assembly Checkpoint Bypass in Human Lung Fibroblasts. Chemical Research in Toxicology, 23(2): 386-395, 2010.
  • Howell C, Maul R, Wenzel W, Koelsch P (2010). Interactions of hydrophobic and hydrophilic self-assembled monolayers with water as probed by sum-frequency-generation spectroscopy. Chemical Physics Letters 494, 193–197.
  • Insulin-like signaling determines survival during stress via posttranscriptional mechanisms in C. elegans. McColl G, Rogers AN, Alavez S, Hubbard AE, Melov S, Link CD, Bush AI, Kapahi P, Lithgow GJ - Cell Metab. 2010 Sep 8;12(3):260-72
  • J. Duy, L. B. Connell, W. Eck, S. D. Collins and R. L. Smith, PREPARATION OF SURFACTANT-STABILIZED GOLD NANOPARTICLE-PEPTIDE NUCLEIC ACID CONJUGATES, J. Nanoparticle Research, 12(7), 2363-2369 (2010).
  • J. Sutanto, R. L. Smith,and S. D. Collins, Scotts D., FABRICATION OF NANO-GAP ELECTRODES AND NANO WIRES USING AN ELECTROCHEMICAL AND CHEMICAL ETCHING TECHNIQUE, Journal of Micromechanics and Microengineering, 20(4) art. 045016, (2010).
  • Karaczyn A, Bani-Yaghoub M, Tremblay R, Kubu C, Cowling R, Adams TL, Prudosky I, Spicer D, Friesel R, Vary C, and Verdi JM. Two novel human NUMB isoforms provide a potential link between development and cancer. Neural Development. 2010; 5:31-46; PMCID: PMC3009962.
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  • Karaczyn A, Bani-Yaghoub M, Tremblay R, Kubu C, Cowling R, Adams TL, Prudovsky I, Spicer D, Friesel R, Vary C, Verdi JM. Two novel human NUMB isoforms provide a potential link between development and cancer. Neural Dev. 2010; 5:31.
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  • Kestener, P, Conlon, PA, Khalil, A Fennell, L, McAteer, RTJ, Gallagher, PT, Arneodo, A 2010. Characterising Complexity in Compound Systems: Segmentation in Wavelet-Space, Astrophysical Journal, 717, 995-1005.
  • Kumar V and Takahashi JS. PARP around the Clock. Cell 142(6): 841-843. 2010.
  • LaCerte, C., Xie, H., Abouiessa, A. and Wise, Sr., J.P. Particulate Depleted Uranium Is Cytotoxic and Clastogenic to Human Lung Epithelial Cells. Mutation Research, 697: 33–37, 2010.
  • Lakshman M, Huang X, Ananthanarayanan V, Jovanovic B, Liu Y, Craft CS, Romero D, Vary CPH, and Bergan RC. Endoglin suppresses human prostate cancer metastasis. Clin Exp Metastasis. 2011;28(1):39-53. PMC Journal - In Process.
  • Libby SJ, Brehm MA, Greiner DL, Shultz LD, McClelland M, Smith KD, Cookson BT, Karlinsey JE, Kinkel TL, Porwollik S, Canals R, Cummings LA, Fang FC. 2010. Humanized nonobese diabetic-scid IL2rgammanull mice are susceptible to lethal Salmonella Typhi infection. Proc Natl Acad Sci U S A 107: 15589-15594
  • Liu J., Shao L, Romero D, Vary CP, Wu W. Slug Inhibits Proliferation of Human Prostate Cancer Cells via Downregulation of Cyclin D1 Expression. Prostate. 2010;70(16):1768-77. PMCID: 2943978.
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  • Logan, R.W., Alvaro, A., and Sarkar, D.K. Role of sympathetic nervous system in the entrainment of circadian natural killer cell function. Brain, Behavior, and Immunity. In press.
  • Logan, R.W., Seggio, J.A., Robinson, S.L., Richard, G.R. and Rosenwasser, A.M. Circadian wheel-running activity during withdrawal from chronic intermittent ethanol exposure in mice. Alcohol, 44, 239-244, 2010.
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  • Losick VP, Haenssler E, Moy M, and Isberg RR. LnaB: a Legionella pneumophila activator of NF-kappaB. Cell Microbiology. 2010, Aug; 12(8):1083-97.
  • Loucks, T.M., Ofori, E., Grindrod, C.M., De Nil, L.F., & Sosnoff, J.J. (2010). Auditory motor integration in oral and manual effectors. Journal of Motor Behavior, 42, 233-239.
  • M. Shahinpoor and David Soltanpour, ”Synthetic Muscle-Based Multi-Powered Active Contact Lens”, US Patent Office, Patent No. 7,850,951, Issued December 14, 2010
  • M. Shahinpoor, “A Review of Patents on Implantable Heart-Compression/Assist Devices and Systems”, in “Recent Patents on Biomedical Engineering Journal”, volume 3, pp. 54-71, Bentham Science Publishers, 2010
  • M. Shahinpoor, “Biomimetics Nananosensors and Nanoactuators”, in “Biomimetics and Bioinspired Nanomaterials”, Editor: Professor Challa S.S. R. Kumar, John Wiley and Sons Publishers, Wiley-VCH Verlag, GmnH & Co. KGaA, Boschstrase 12, Weinheim, Germany, vol. 7, Chapter 8, pp. 283-301, 2010
  • Maginnis, M.S., Haley S.A., Gee, G.V., and Atwood, W.J. (2010). Role of N-linked Glycosylation of the 5-HT2A Receptor in JC Virus Infection. Journal of Virology, 84(19):9677-84.
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  • McAteer, RT, Kestener, P, Arneodo, A, Khalil, A 2010. Automated Coronal Loop Detection using a Wavelet Transform Modulus Maxima Method, Solar Physics, Solar Image Processing and Analysis, 262, 387-397.
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  • Mech Dev. 2010 Jul-Aug;127(7-8):321-8. doi: 10.1016/j.mod.2010.04.004.
  • Mendoza K.C., McLane V.D., Kim S., and Griffin J.D. In vitro application of gold nanoprobes in live neurons for phenotypical classification, connectivity assessment, and electrophysiological recording. Brain Research, April 2010.
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  • Mikulak, J., Teichberg, S., Arora, S., Kumar, D., Yadav, A., Salhan, D., Pullagura, S., Mathieson, P.M., Saleem, M.A., Singhal, P.C., 2010. DC-specific ICAM-3-grabbing nonintegrin mediates internalization of HIV-1 into human podocytes. Am.
    J. Physiol. Ren. Physiol. 299 (3), F664–F673.
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  • Okada-Ogawa A, Kurose M, Meng ID (2010) Attenuation of cannabinoid-induced inhibition of medullary dorsal horn neurons by a kappa-opioid receptor antagonist. Brain Res. 1359: 81-9.
  • Oporto, G.S. ; Gardner, D.J. ; Neivandt, D.J. “Adhesion Phenomina in Wood-Plastic Composites”, Proc. of the 10th International Conference on Wood & Biofiber Plastic Composites, 165 (2010)
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  • Osborn MD, Lowery JJ, Skorput AG, Giuvelis D, Bilsky EJ. In vivo characterization of the opioid antagonist nalmefene in mice. Life Sci, 86(15-16):624-30, 2010. PubMed PMID: 20159022; PubMed Central PMCID: PMC2848904.
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  • P. S. Spinney, D. G. Howitt, R. L. Smith and S. D. Collins, “NANOPORE FORMATION BY LOW-ENERGY FOCUSED ELECTRON BEAM MACHINING”, Nanotechnology, 21(37), article 375301 (2010).
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  • Peterson SM, Iskenderian A, Cook L, Romashko A, Tobin K, Jones M, Norton A, Gomez-Yafal A, Heartlein MW, Concino MF, Liaw L, Martini PG. BMC Cancer 2010 10L427.
  • Peterson, Sarah M., Andrea Iskenderian, Lynette Cook, Alla Romashko, Kristen Tobin, Michael Jones, Angela Norton, Alicia Gómez-Yafal, Michael W. Heartlein, Michael F. Concino, Lucy Liaw and Paolo G.V. Martini, "Human Sulfatase 2 inhibits in vivo growth of MDA-MB-231 human breast cancer xenografts" BMC Cancer 2010, 10:427.
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  • Phennicie, R.T., M.J. Sullivan, J.T. Singer, J.A. Yoder, C.H. Kim. 2010. Specific Resistance to Pseudomonas aeruginosa infection in zebrafish is mediated by the cystic fibrosis transmembrane conductance regulator. Infect Immun. 78:4542-50.
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  • Racki WJ, Covassin L, Brehm M, Pino S, Ignotz R, Dunn R, Laning J, Graves SK, Rossini AA, Shultz LD, Greiner DL. 2010. NOD-scid IL2rgamma(null) mouse model of human skin transplantation and allograft rejection. Transplantation 89: 527-536
  • Recla JM, Invited Review: New and emerging therapeutic agents for the treatment of fibromyalgia: An update. Journal of Pain Research. 2010; 3: 89–103.
  • Recla JM, Letter to the editor: Advances in diagnostic and treatment options in patients with fibromyalgia syndrome. Open Access Rheumatology: Research and Reviews. 2010 June; 2010(2): 27-28.
  • Recla, JM. Recent Developments in the Management of Post-Traumatic Pain. ENJ. 2010 June; 2(1): 73-82. Epub 2010 Feb 18.
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  • Ren G, Zhao X, Zhang L, Zhang J, L'Huillier A, Ling W, Roberts AI, Le AD, Shi S, Shao C, Shi Y. Inflammatory cytokine-induced intercellular adhesion molecule-1 and vascular cell adhesion molecule-1 in mesenchymal stem cells are critical for immunosuppression. Journal of Immunology. 2010 Mar 1;184(5):2321-8.
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  • Ribeiro, J.M., Valenzuela, J.G., Pham, V.M., Kleeman, L., Barbian, K.D., Favreau, A.J., Eaton, D.P., Aoki, V., Hans-Filho, G., Rivitti, E.A., et al. 2010. An insight into the sialotranscriptome of Simulium nigrimanum, a black fly associated with fogo selvagem in South America. Am J Trop Med Hyg 82:1060-1075.
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  • Robitaille, JF, Joncas, G, Khalil, A 2010. Morphological Analysis of HI Features. III. Metric Space Technique Revisited, Monthly Notices of the Royal Astronomical Society, 405, 636-656.
  • Romero D, Terzic A, Conley BA, Craft C, Jovanovic B, Bergan R, and Vary CPH. Endoglin phosphorylation by ALK2 contributes to the regulation of prostate cancer cell migration. Carcinogenesis. 2010;31(3):359-66. PMCID: 2832542.
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  • Rosenwasser, A.M. Circadian clock genes: non-circadian roles in sleep, addiction, and psychiatric disorders? Neuroscience and Biobehavioral Reviews, 34, 1249-1255, 2010.
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  • Rosenwasser, A.M., Clark, J.W., Fixaris, M.C., Belanger, G.V. and Foster, J.A. Effects of repeated light-dark phase shifts on voluntary ethanol and water intake in male and female Fischer and Lewis rats. Alcohol, 44, 229-237, 2010.
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  • Saito Y, Kitamura H, Hijikata A, Tomizawa-Murasawa M, Tanaka S, Takagi S, Uchida N, Suzuki N, Sone A, Najima Y, Ozawa H, Wake A, Taniguchi S, Shultz LD, Ohara O, Ishikawa F. 2010. Identification of therapeutic targets for quiescent, chemotherapy-resistant human leukemia stem cells. Sci Transl Med 2: 17ra19
  • Saito Y, Uchida N, Tanaka S, Suzuki N, Tomizawa-Murasawa M, Sone A, Najima Y, Takagi S, Aoki Y, Wake A, Taniguchi S, Shultz LD, Ishikawa F. 2010. Induction of cell cycle entry eliminates human leukemia stem cells in a mouse model of AML. Nat Biotechnol 28: 275-280
  • Sally EJ, Xu H, Dersch CM, Hsin LW, Chang LT, Prisinzano TE, Simpson DS, Giuvelis D, Rice KC, Jacobson AE, Cheng K, Bilsky EJ, Rothman RB. Identification of a novel "almost neutral" micro-opioid receptor antagonist in CHO cells expressing the cloned human mu-opioid receptor. Synapse. 64(4):280-8, 2010. PubMed PMID: 19953652; PubMed Central PMCID: PMC2821452.
  • Sanno H; Shen X; Kuru N; Bormuth I; Bobsin K; Gardner H A R; Komljenovic D; Tarabykin V; Erzurumlu R; Tucker K L (2010) Control of postnatal apoptosis in the neocortex by RhoA-subfamily GTPases determines neuronal density.
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  • Santibanez JF, Pérez-Gómez E, Fernandez-L A, Garrido-Martin EM, Carnero A, Malumbres M, Vary CPH, Quintanilla M, and Bernabéu C. The TGF-? co-receptor endoglin modulates the expression and transforming potential of H-Ras. Carcinogenesis. 2010;31(12):2145-2154. PMC Journal - In Process.
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  • Shimomura K, Lowrey PL, Vitaterna MH, Buhr ED, Kumar V, Hanna P, Omura C, Izu- mo M, Low SS, Barrett, RK, LaRue SI, Green CB, Takahashi JS. Genetic suppression of the circadian Clock mutation by the melatonin biosynthesis pathway. PNAS 107(18): 8399-8403. 2010.
  • Shultz LD, Saito Y, Najima Y, Tanaka S, Ochi T, Tomizawa M, Doi T, Sone A, Suzuki N, Fujiwara H, Yasukawa M, Ishikawa F. 2010. Generation of functional human T-cell subsets with HLA-restricted immune responses in HLA class I expressing NOD/SCID/IL2r gamma(null) humanized mice. Proc Natl Acad Sci U S A 107: 13022-13027
  • Singer, J. T., M. J. Sullivan, L. A. Porter, R. T. Phennicie, and C. H. Kim. 2010. Broad host range plasmids for red fluorescent protein labeling of Gram-negative bacteria for use in the zebrafish model system. Appl. Environ. Microbiol. 76:3467-74.
  • Snow K.J., Wright S.M., Woo Y., Titus L.C., Mills K.D., Shopland L.S. (2010) Nuclear positioning, higher-order folding, and gene expression of Mmu15 sequences are refractory to chromosomal translocation. Chromosoma Aug 12 EPUB
  • Snow KJ, Wright SM, Woo Y, Titus LC, Mills KD, Shopland LS: Nuclear positioning, higher-order folding, and gene expression of Mmu15 sequences are refractory to chromosomal translocation. Chromosoma 2010.
  • Streicher JM, Kamei K, Ishikawa TO, Herschman H, Wang Y. 2010. Compensatory hypertrophy induced by ventricular cardiomyocyte-specific COX-2 expression in mice. Journal of Molecular and Cellular Cardiology. 49(1):88-94.
  • Streicher JM, Ren S, Herschman H, Wang Y. 2010. MAPK-Activated Protein Kinase-2 in Cardiac Hypertrophy and Cyclooxygenase-2 Regulation in Heart. Circulation Research. 106(8):1434-43.
  • Subramanya S, Kim SS, Abraham S, Yao J, Kumar M, Kumar P, Haridas V, Lee SK, Shultz LD, Greiner D, N M, Shankar P. 2010. Targeted delivery of small interfering RNA to human dendritic cells to suppress dengue virus infection and associated proinflammatory cytokine production. J Virol 84: 2490-2501
  • Tang Y, Harrington A, Yang X, Friesel RE, Liaw L. The contribution of the Tie2+ lineage to primitive and definitive hematopoietic cells. Genesis 2010 48:563-567.
  • Tang Y, Urs S, Boucher J, Bernaiche T, Venkatesh D, Spicer DB, Vary CP, Liaw L. Notch and TGF-b signaling pathways cooperatively regulate vascular smooth muscle cell differentiation. J Biol Chem. 2010;285(23):17556-63. PMCID: 2878520.
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  • Tang Y, Urs S, Boucher J, Bernaiche T, Venkatesh D, Spicer DB, Vary CP, Liaw L. Notch and transforming growth factor-beta signaling pathways cooperatively regulate vascular smooth muscle cell differentiation. J Biol Chem. 2010 285:17556-17563.
  • Tang Y, Urs S, Boucher J, Bernaiche Y, Venkatesh D, Spicer DB, Vary CP, and Liaw L. Notch and TGF? signaling pathways cooperatively regulate vascular smooth muscle cell differentiation. J Biol Chem. 2010; 285(23):17556-63.
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  • Tang, Y., et al., Notch and TGF{beta} signaling pathways cooperatively regulate vascular smooth muscle cell differentiation. J Biol Chem.
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  • Tsaih S, Pezzolesi M, Yuan R, Krolewski A, Korstanje R (2010) Genetic analysis of albuminuria in the aging mouse. Kidney International 77(3):201-210.
  • Updike, D.L., Strome, S. (2010) P Granule Assembly and Function in C. elegans Germ Cells. (review). J Androl. 31(1):53-60.
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  • Urs S, Venkatesh D, Tang Y, Henderson T, Yang X, Friesel RE, Rosen CJ, Liaw L. Sprouty1 is a critical regulatory switch of mesenchymal stem cell lineage allocation. FASEB J. 2010 29:3264-3273.
  • Verreault D, Kurz V, Howell C, Koelsch P (2010). Measuring cells for probing solid/liquid interfaces with broadband sum-frequency-generation spectroscopy. Review of Scientific Instruments 81, 063111.
  • Wang X, Reagan MR, Kaplan DL. Synthetic Adipose Tissue Models for Studying Mammary Gland Development and Breast Tissue Engineering. J Mammary Gland Biol Neoplasia. 2010;15(3):365-376. PMID: 20835885
  • Widespread genomic breaks generated by activation-induced cytidine deaminase are prevented by homologous recombination.
    Hasham MG, Donghia NM, Coffey E, Maynard J, Snow KJ, Ames J, Wilpan RY, He Y, King BL, Mills KD. Nat Immunol. 2010 Sep;11(9):820-6. Epub 2010 Jul 25.
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  • Wise Jr., J.P., Wise, S.S., Wise, J., McKay, J., Browne, M., Joyce, K., Braun, M., Wise, C., Duffy, R., Estell, E., Brown, J., Gianios Jr., C., Mason, M., Shehata, T., Hammond, D., Thompson, W.D., and Wise, Sr., J.P. Altered Gravity Exacerbates Chromate-Induced Genotoxicity. Gravitational and Space Biology, 23(2): 83-84, 2010.
  • Wise, S.S., Holmes, A.L., Qin, Q., Xie, H., Katsifis, S., Thompson, W.D. and Wise, Sr., J.P. Comparative Genotoxicity and Cytotoxicity of Four Hexavalent Chromium Compounds in Human Bronchial Cells. Chemical Research in Toxicology, 23(2): 365-372, 2010.
  • Wise, S.S., and Wise, Sr., J.P. Aneuploidy as an Early Mechanistic Event in Metal Carcinogenesis. Biochemical Society Transactions 38(6): 1650-1654, 2010.
  • Wise, Sr., J.P., Goodale, B.C., Wise, S.S., Craig, G., Sigdele, A., Walter, R.B., Thompson, W.D., Ng, A.K., Spalding, M.J. and Mason, M.D. Silver Nanospheres Are Cytotoxic and Genotoxic to Fish Cells. Aquatic Toxicology, 97: 34–41, 2010.
  • Wise, Sr., J.P., Wise, S.S., Holmes, A.L., LaCerte, C., Shaffiey, F, and Aboueissa, A. The Cytotoxicity and Genotoxicity of Hexavalent Chromium in Steller Sea Lion Lung Fibroblasts Compared to Human Lung Fibroblasts. Comparative Biochemistry and Physiology - Part C: Toxicology & Pharmacology 152(1): 91-98, 2010.
  • Wise, Sr., J.P., Wise, S.S., Holmes, A.L., LaCerte, C., Shaffiey, F., and Aboueissa, A. The Cytotoxicity and Genotoxicity of Hexavalent Chromium in Steller Sea Lion Lung Fibroblasts Compared to Human Lung Fibroblasts. Comparative Biochemistry and Physiology - Part C: Toxicology & Pharmacology, 152(1): 91-98, 2010.
  • With TOR, less is more: a key role for the conserved nutrient-sensing TOR pathway in aging. Kapahi P, Chen D, Rogers AN, Katewa SD, Li PW, Thomas EL, Kockel L - Cell Metab. 2010 Jun 9;11(6):453-65
  • Wong AK, Ruhe AL, Dumont BL, Robertson KR, Guerrero G, Shull SM, Ziegle JS, Millon LV, Broman KW, Payseur BA, Neff MW. (2010) A comprehensive linkage map of the dog genome. Genetics 184:595-605.
  • Xie, H., LaCerte, C., Thompson, W.D. and Wise, Sr., J.P. Depleted Uranium Induces Neoplastic Transformation in Human Lung Epithelial Cells. Chemical Research in Toxicology, 23(2): 373-378, 2010.
  • Yang X, Kilgallen S, Andreeva V, Spicer DB, Pinz I, and Friesel R. Conditional expression of Spry1 in neural crest causes craniofacial and cardiac defects. BMC Dev Biol. 2010; 11;10:48.
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  • Zaynagetdinov R., Ryzhov S., Goldstein A.E., Novitskiy S.V., Goleniewska K., Polosukhin V.V., Yin H., Morschl E., Zhou Y., Mitchell D., Blackburn M.R., Peebles R.S., Biaggioni I, Feoktistov I, Attenuation of Allergen-Induced Chronic Pulmonary Inflammation in A2B Adenosine Receptor Knockout Mice. American Journal of Respiratory Cell and Molecular Biology 2010; 42(5):564-71. PMCID: PMC2874442.
  • Zhang B, Strauss AC, Chu S, Li M, Ho Y, Shiang KD, Snyder DS, Huettner CS, Shultz L, Holyoake T, Bhatia R. 2010. Effective targeting of quiescent chronic myelogenous leukemia stem cells by histone deacetylase inhibitors in combination with imatinib mesylate. Cancer Cell 17: 427-442
  • Zhao X*, Ren G* (co-first author), Liang L, Ai PZ, Zheng B, Tischfield JA, Shi Y, Shao C. Brief report: interferon-gamma induces expansion of Lin(-)Sca-1(+)C-Kit(+) Cells. Stem Cells. 2010 Jan;28(1):122-6.
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  • "Cancer Chemopreventive and Anticancer Evaluation of Extracts and Fractions from Marine Macro- and Microorganisms Collected from Twilight Zone Waters Around Guam", Schupp PJ, Kohlert-Schupp C, Whitefield S, Engemann A, Rohde S, Hemscheidt T, Pezzuto JM, Kondratyuk TP, Park EJ, Marler L, Rostama B, Wright AD, Natural Product Communications 2009 Dec; 4(12):1717-28, PMID: 20120114
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  • **This paper was featured in the Current Topics Section of the June 2009 issue of Microbe, an American Society for Microbiology (ASM) publication.
  • *Kizy A. E. and M. N. Neely. First Streptococcus pyogenes Signature-Tagged Mutagenesis Screen Identifies Novel Virulence Determinants. Infection and Immunity. 77:1854-1865. 2009.
  • *Phelps, H.A., D.R. Runft and M.N. Neely. Adult Zebrafish model of streptococcal infection. Current Protocols in Microbiology, Chapter 9: Unit 9D.1. 2009.
  • 1. Ahn M, Lee SJ, Li X, Jiménez JA, Zhang YP, Bae KH, Mohammadi Y, Kao C, Gardner TA. Enhanced combined tumor-specific oncolysis and suicide gene therapy for prostate cancer using M6 promoter. Cancer Gene Ther. 2009 Jan;16(1):73-82.
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  • 18. Graziani I, Doyle A, Sterling S, Kirov A, Tarantini F, Landriscina M, Kumar TSK, Neivandt D, Prudovsky I. “Protein folding does not prevent the nonclassical export of FGF1 and S100A13.” Biochem Biophys Res Commun. 2009; 381:350-354.
  • 19. Kathir KM, Gao L, Dakshinamurthy R, Daily AE, Brixey S., Liu, H.; Davis D., Adams P., Prudovsky I., Kumar TSK. “Characterization of the copper and lipid interactions of the C2B domain of synaptotagmin 1 ‑ relevance to the non‑classical secretion of the human acidic fibroblast growth factor.” BBA ‑ Biomembranes, 2009 [Epub. ahead of print].
  • 21. Prudovsky, I, and Donato, R. "S100A13.” Nature Molecular Pages (electronic publication), 2009.
  • 4E-BP extends lifespan upon dietary restriction by enhancing mitochondrial activity in Drosophila. Zid BM, Rogers AN, Katewa SD, Vargas MA, Kolipinski MC, Lu TA, Benzer S, Kapahi P - Cell. 2009 Oct 2;139(1):149-60
  • Alley, D. F., Gordon, N. R., Langley-Turnbaugh, S., Wise, Sr., J.P., Van Epps, G. and Jalbert, A. The Effect of PM10 on Human Lung Fibroblasts. Toxicology and Industrial Health, 25: 111–120, 2009.
  • Arighi CN, Liu H, Natale DA, Barker WC, Drabkin H, Blake JA, Smith B, Wu CH. 2009. TGF-beta signaling proteins and the Protein Ontology. BMC Bioinformatics 10(Suppl 5):S3.
  • Bernstein JM, Brooks SP, Lehman HK, Pope L, Sands A, Shultz LD, Bankert RB. 2009. Human nasal polyp microenvironments maintained in a viable and functional state as xenografts in NOD-scid IL2rgamma(null) mice. Ann Otol Rhinol Laryngol 118: 866-875
  • Bilenko, N.Y., Grindrod, C.M., Myers, E.B., & Blumstein, S.E. (2009). Neural correlates of semantic competition during processing of ambiguous words. Journal of Cognitive Neuroscience, 21, 960-975.
  • Blake JA, Bult CJ, Eppig JT, Kadin JA, Richardson JE; Mouse Genome Database Group. 2009. The Mouse Genome Database genotypes::phenotypes. Nucleic Acids Res. 37(Database):D712-9.
  • Blank U, Brown AC, Adams DC, Karolak MJ, Oxburgh L. BMP7 promotes proliferation of nephron progenitor cells via a JNK-dependent mechanism. Development. 2009;136(21):3557-66.
  • Brauner, I., Spicer, D.B., Krull, C.E., and Venuti, J.M., (2009) Identification of responsive cells in the developing somite supports a role for beta-catenin-dependent Wnt signaling in maintaining the DML myogenic progenitor pool. Dev Dyn. 2009; 239:222-36
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  • Britton, B., Blumstein, S.E., Myers, E.B., & Grindrod, C.M. (2009). The role of spectral and durational properties on hemispheric asymmetries in vowel perception. Neuropsychologia, 47, 1096-1106.
  • Brown, K. L., Burman, M. A., Duong, H. B., & Stanton, M. E. (2009). Neonatal binge alcohol exposure produces dose dependent deficits in interstimulus interval discrimination eyeblink conditioning in juvenile rats. Brain Res, 1248, 162-175.
  • Bubier JA, Sproule TJ, Foreman O, Spolski R, Shaffer, DJ Morse HC 3rd, Leonard WJ, Roopenian DC 2009. A Critical Role for IL21 Receptor Signaling in the Pathogenesis of Systemic Lupus Erythematosus in BXSB-Yaa Mice. Proc Natl Acad Sci, Feb 3;106(5):1518-23
  • Burman, M.A., Murawski, N.J., Schiffino, F.L., Rosen, J., Stanton, M.E. (2009). Factors governing single-trial contextual fear conditioning in the weanling rat. Behavioral Neuroscience. 123(5), 1148-1152.
  • Chase TH, Cox GA, Burzenski L, Foreman O, Shultz LD. 2009. Dysferlin deficiency and the development of cardiomyopathy in a mouse model of limb-girdle muscular dystrophy 2B. Am J Pathol 175: 2299-2308
  • Chen, P.Y. and Friesel, R. FGFR1 forms an FRS2-dependent complex with mTOR to regulate smooth muscle marker gene expression. Biochem. Biophys. Res. Comm., 382:424-429, 2009.
  • Chen, P.Y., Simons, M., and Friesel, R. FRS2 via FGFR1 is required for PDGFR?-mediated regulation of vascular smooth muscle marker gene expression. J. Biol. Chem., 284:15980-15992, 2009.
  • Chopra P, Diiorio P, Pino SC, Wilson SB, Phillips NE, Mordes JP, Rossini AA, Greiner DL, Shultz LD, Bortell R. 2009. Failure of alpha-galactosylceramide to prevent diabetes in virus-inducible models of type 1 diabetes in the rat. In Vivo 23: 195-201
  • Chronic exposure to arsenic in the drinking water alters the expression of immune response genes in mouse lung, Courtney D. Kozul, Thomas H. Hampton, Jennifer C. Davey, Julie A. Gosse, Athena P. Nomikos, Phillip L. Eisenhauer, Daniel J. Weiss, Jessica E. Thorpe, Michael A. Ihnat, Joshua W. Hamilton, Environmental Health Perspectives, vol. 117, 2009, pp. 1108-1115
  • Cook SA, Collin GB, Bronson RT, Naggert JK, Liu DP, Akeson EC, Davisson MT. 2009. A mouse model for Meckel syndrome type 3. J Am Soc Nephrol 20: 753-764
  • Cox A, Ackert-Bicknell C, Dumont BL, Ding Y, Bell, JT, Brockmann GA, Wergedal JE, Bult C, Paigen B, Flint J, Tsaih S-W, Churchill GA, Broman KW. (2009) A new standard genetic map for the laboratory mouse. Genetics 182: 1335-1344.
  • Das J*, Ren G* (co-first author), Zhang L, Roberts AI, Zhao X, Bothwell AL, Van Kaer L, Shi Y, Das G. Transforming growth factor beta is dispensable for the molecular orchestration of Th17 cell differentiation. The Journal of Experimental Medicine. 2009 Oct 26;206(11):2407-16.
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  • Dickey, ID, Donahue, DW, Peshlov, B, Nohe, A, Khalil, A, Mason, M, Zhang, R, Aponte, C, Davisson, TH, Engelman, D, Hawkins, M 2009. Pore size modulates strength of soft-tissue in-growth and growth factor expression into novel porous titanium implants, Transactions of the Orthopaedic Research Society, 34, 2213.
  • Dolan ME, Blake JA. 2009. Using ontology visualization to facilitate access to knowledge about human disease genes. Applied Ontology 4(1):35-49.
  • Dore, G. A., Elias, M. F., Robbins, M. A., Elias, P. K., Nagy, Z. (2009). Presence of the APOE ε4 allele modifies the relationship between type 2 diabetes and cognitive performance: The Maine–Syracuse Study. Diabetologia, 52, 2551-2560.
  • Dowell KG, McAndrews-Hill M, Hill DP, Drabkin HJ, Blake JA. 2009. Integrating text mining into the MGI biocuration workflow. Database 2009 bap019. doi:101.1093/database/bap019.
  • Dowell, KG, MS McAndrews-Hill, DP Hill, HJ Drabkin, JA Blake (2009) "Integrating text mining into the MGI biocuration workflow." Database, Vol. 2009, bap019; doi:10.1093/database/bap019
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  • Duchesnes CE, Naggert JK, Tatnell MA, Beckman N, Marnane RN, Rodrigues JA, Halim A, Pontre B, Stewart AW, Wolff GL, Elliott R, Mountjoy KG. 2009. New Zealand Ginger mouse: novel model that associates the tyrp1b pigmentation gene locus with regulation of lean body mass. Physiol Genomics 37: 164-174
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  • Graziani, I. ; Doyle, A. ; Sterling, S ; Kirov, A. ; Tarantini, F. ; Ladnriscina, M. : Kumar, T.K.S. ; Neivandt, D. ; Prudovsky, I. “Protein Folding Does Not Prevent the Nonclassical Export of FGF1 and S100A13”, Biochemical and Biophysical Research Communications 381, 350 (2009)
  • Graziani, I., Doyle, A., Sterling, S., Kirov, A., Tarantini, F., Landriscina, M., Kumar, T.K.S., Neivandt, D., and Prudovsky, I., Protein folding does not prevent the nonclassical export of FGF1 and S100A13. Biochem. Bioph. Res. Co. 2009, 381, 350-354.
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  • Hess DC, Myers CL*, Huttenhower C*, Hibbs MA*, Hayes A, Paw J, Clore J, Mendoza R, San Luis B, Costanzo M, Boone C, Caudy AA, Troyanskaya OG. Computationally driven, quantitative experiments discover genes required for mitochondrial biogenesis. PLoS Genetics (2009) 5(3):e1000407. (*Equal contribution).
  • Hess ST. 2009. Red Lights, Camera, Photoactivation! Nature Methods 6: 124-125.
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  • Hibbs MA*, Myers CL*, Huttenhower C*, Hess DC, Caudy AA, Li K, Troyanskaya OG. Analysis of Computational Functional Genomic Approaches for Directing Experimental Biology: a Case Study in Mitochondrial Inheritance. PLoS Computational Biology (2009) 5(3):e1000322. (*Equal contribution).
  • Hibbs MA. The Effects of Pre-processing and Parameter Choices on Searches Through Large Gene Expression Data Collections. IEEE Int Conf on Genomic Signal Processing and Statistics (2009).
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  • Huttenhower C, Haley EM, Hibbs MA, Dumeaux V, Barrett DR, Coller HA, Troyanskaya OG. Exploring the human genome with functional maps. Genome Res (2009) 19(6):1093-106.
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  • Jaiswal S, Pearson T, Friberg H, Shultz LD, Greiner DL, Rothman AL, Mathew A. 2009. Dengue virus infection and virus-specific HLA-A2 restricted immune responses in humanized NOD-scid IL2rgammanull mice. PLoS One 4: e7251
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  • Kelly, MW and CA Henry. (2009), VISIONS: the art of science. Molecular Reproduction and Development, 76: 1005.
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  • Keyari C, Knapp B, Bidlack J, Lowery J, Bilsky E, Polt R (2009). Glycosyl-enkephalins: synthesis and binding at the mu, delta and kappa opioid receptors. Antinociception in mice. Adv Exp Med Biol 611:495-6.
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  • Keyari, C.M., Knapp, B.I., Bidlack, J.M., Lowery, J., Bilsky, E.J. and Polt, R. Glycosyl-Enkephalins: Synthesis and Binding at the Mu, Delta & Kappa Opioid Receptors: Antinociception in Mice. Advances in Experimental Medicine and Biology, 611: 495-496, 2009.
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  • Korc, M. and Friesel, R.E. The role of fibroblast growth factors in tumor growth. Curr. Cancer Drug Targets, 9(5):639-651, 2009.
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  • Li Chen, T., Wise, S.S., Kraus, S., Shaffiey, F., Grau, M., Thompson, W.D., Zheng, T., Zhang, Y., Romano, T., O’Hara, T. and Wise, Sr., J.P. Particulate Hexavalent Chromium Is Cytotoxic and Genotoxic to the North Atlantic Right Whale (Eubalaena glacialis) Lung and Skin Fibroblasts. Environmental and Molecular Mutagenesis, 50: 387-393, 2009.
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  • M. Lu and J. Ma. (2009) A Minimalist Network Model for Studying Biomolecular Vibration. Book Chapter in Proteins: Energy, Heat and Signal Flow. CRC Press: 229 - 245.
  • M. Shahinpoor and David Soltanpour, ”Surgical Correction of Ptosis by Polymeric Artificial Muscles”, US Patent Office, Patent No. 7,625,404, Issued December 1, 2009
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  • Mangada J, Pearson T, Brehm MA, Wicker LS, Peterson LB, Shultz LD, Serreze DV, Rossini AA, Greiner DL. 2009. Idd loci synergize to prolong islet allograft survival induced by costimulation blockade in NOD mice. Diabetes 58: 165-173
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  • Memory deficits are associated with impaired ability to modulate neuronal excitability in middle-aged mice.
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  • Miller DM, Thornley TB, Pearson T, Kruger AJ, Yamazaki M, Shultz LD, Welsh RM, Brehm MA, Rossini AA, Greiner DL. 2009. TLR agonists prevent the establishment of allogeneic hematopoietic chimerism in mice treated with costimulation blockade. J Immunol 182: 5547-5559
  • Min, C., Yu, Z., Kirsch, K.H., Zhao, Y., Vora, S., Trackman, P.C., Spicer, D.B., Rosenberg, L., Sonenshein, G.E., and Palmer, J.R., (2009) A loss of function polymorphism in the propeptide domain of the LOX gene and breast cancer. Cancer Res. 69:6685-93.
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  • Mitochondria and metazoan epigenesis. Coffman, J.A. (2009). Semin. Cell Dev. Biol. 20: 321-329.
  • Mokler, D.J., Dugal, J.R., Hoffman, J.M. and Morgane, P.J. Functional interrelations between nucleus raphé dorsalis and nucleus raphé medianus: A dual probe microdialysis study of glutamate-stimulated serotonin release. Brain Research Bulletin, 78 (4-5): 132-138, 2009.
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  • Monetta, L., Grindrod, C.M., & Pell, M.D. (2009). Irony comprehension and theory of mind deficits in patients with Parkinson’s disease. Cortex, 45, 972-981.
  • Moorman, J., Yao, Z.Q., Bilsky, E.J., and Yin, D. Opioid Receptor Antagonists-Mediated Signaling in Immune System. In: Opioid Receptors and Antagonists: From Bench to Clinic (volume in the Contemporary Neuroscience series), R.L. Dean, S.S. Negus, and E.J. Bilsky (Eds.), Human Press, Totawa, NJ, pp. 137-151, 2009.
  • Mouta-Bellum C, Kirov A, Miceli-Libby L, Mancini ML, Petrova TV, Liaw L, Prudovsky I, Thorpe PE, Miura N, Cantley LC, Alitalo K, Fruman DA, and Vary CPH. Organ-specific lymphangiectasia, arrested lymphatic sprouting, and maturation defects resulting from gene-targeting of the PI3K regulatory isoforms p85alpha, p55alpha, and p50alpha. Dev Dyn 2009; 238:2670-2679.
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  • Moxley J.F., Jewett M.C., Antoniewicz M.R., Villas-Boas S.G., Alper H., Wheeler R.T., Tong L., Hinnebusch A.G., Ideker T., Nielsen J., Stephanopoulos G. (2009) Linking high-resolution metabolic flux phenotypes and transcriptional regulation in yeast modulated by the global regulator Gcn4p. Proc Natl Acad Sci U S A. 2009 Apr 21;106(16):6477-82.
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  • Okada-Ogawa A, Porreca F, Meng ID (2009) Sustained morphine-induced sensitization and loss of diffuse noxious inhibitory controls in dura-sensitive medullary dorsal horn neurons. J Neurosci. 29: 15828-15835.
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  • Rieger S, Senghaas N, Walch A, Köster RW: Cadherin-2 Controls Directional Chain Migration of Cerebellar Granule Neurons. PLoS Biol. Nov;7 (11) 2009 (Evaluated by Faculty of 1000)
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  • Rosenwasser, A.M. Functional neuroanatomy of sleep and circadian rhythms. Brain Research Reviews, 61, 281-306, 2009. DOI: 10.1016/j.brainresrev.2009.08.001.
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  • Rothman, R.B., Ananthan, S. and Bilsky, E.J. Novel Opioid Antagonists with Mixed/Dual Selectivity. In: Opioid Receptors and Antagonists: From Bench to Clinic (volume in the Contemporary Neuroscience series), R.L. Dean, S.S. Negus, and E.J. Bilsky (Eds.), Human Press, Totawa, NJ, pp. 67-80, 2009.
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  • Seggio, J.A., Fixaris, J.D., Reed, J.D., Logan, R.W. and Rosenwasser, A.M. Chronic ethanol intake alters circadian phase shifting and free-running period in mice. Journal of Biological Rhythms, 24, 304-312, 2009. DOI: 10.1177/0748730409338449
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  • Singh P, Alley TL, Wright SM, Kamdar S, Schott W, Wilpan RY, Mills KD, Graber JH. 2009. Global changes in processing of mRNA 3’ untranslated regions characterize clinically distinct cancer subtypes. Cancer Research. (in press)
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  • Stevens, Craig; Lin, Yao; Harrison, Ben; Burch, Lindsay; Ridgway, Rachel A; Sansom, Owen; Hupp, Ted; Peptide combinatorial libraries identify TSC2 as a death-associated protein kinase (DAPK) death domain-binding protein and reveal a stimulatory role for DAPK in mTORC1 signaling Journal of biological chemistry 284 1 334-344 2009 ASBMB
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  • Sullivan, C., J. Charette, J. Catchen, C.R. Lage, G. Giasson, J.H. Postlethwait, P.J. Millard and C.H. Kim. 2009. The gene history of zebrafish tlr4a and tlr4b is predictive of their divergent functions. J. Immunol. 83:5896-908.
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  • Wang Y, Nishina PM, Naggert JK. 2009. Degradation of IRS1 leads to impaired glucose uptake in adipose tissue of the type 2 diabetes mouse model TALLYHO/Jng. J Endocrinol 203: 65-74
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  • Wise, Sr., J.P., Payne, R., Wise, S.S., LaCerte, C., Wise, J., Gianios, Jr., C., Thompson, W.D., Perkins, C., Zheng, T., Zhu, C., Benedict, L. and Kerr, I. A Global Assessment of Chromium Pollution using Sperm Whales (Physeter macrocephalus) as an Indicator Species. Chemosphere, 75: 1461–1467, 2009.
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  • Xie, H., Holmes, A.L., Young, J.L., Qin, Q., Joyce, K, Pelsue, S.C., Peng, C., Wise, S.S., Jeevarajan, A., Wallace, W.T., Hammond, D. and Wise, Sr., J.P. Zinc Chromate Induces Chromosome Instability and DNA Double Strand Breaks in Human Lung Cells. Toxicology and Applied Pharmacology., 234: 293–299, 2009.
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  • Yuan R, Tsaih S-W, Petkova S, Evsikova CM, Xing S, Marion M, Bogue M, Mills K,
    Peters LL, Bult C, Rosen C, Sundberg J, Harrison DE, Churchill GA, Paigen BJ. 2009. Aging in 31 inbred strains of mice: study design and interim report on median lifespans. Aging Cell 8, 277-287.
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  • Zhang X, Reagan MR, Kaplan DL. Electrospun silk biomaterial scaffolds for regenerative medicine. Adv Drug Deliv Rev. 2009;61(12):988-1006. PMCID: PMC2774469.
  • Zhang, Q., Davis, J.C., Lamborn, I.T., Freeman, A.F., Jing, H., Favreau, A.J., Matthews, H.F., Davis, J., Turner, M.L., Uzel, G., et al. 2009. Combined immunodeficiency associated with DOCK8 mutations. N Engl J Med 361:2046-2055.
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  • Urs U, Roudabush A, O’Neill C, Pinz I, Prudovsky I, Kacer D, Liaw L, Small D: Soluble forms of the Notch ligands Delta1 and Jagged1 promote in vivo tumorigenicity in NIH3T3 fibroblasts with distinct phenotypes. American Journal of Pathology, 173(3):865-78. PMCID: PMC2527077
  • 2. Li X, Liu YH, Lee SJ, Gardner TA, Jeng MH, Kao C. Prostate Restricted Replicative Adenovirus Expressing Human Endostatin-Angiostatin Fusion Gene Exhibiting Dramatic Antitumor Efficacy. Clinical Cancer Res. 2008 Jan; 14(1):291-299. (Journal highlight)
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  • 23. Lee, CW, Raskett, CM, Prudovsky, I, Altieri, DC. Molecular Dependence of Estrogen Receptor-Negative Breast Cancer on a Notch-Survivin Signaling Axis. Cancer Res., 2008, 68: 5273-81.
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  • A new approach to analysis and interpretation of toxicogenomic gene expression data and its importance in examining biological responses to low, environmentally-relevant doses of toxicants, Julie A. Gosse, Thomas H. Hampton, Jennifer C. Davey, Joshua W. Hamilton, in book entitled Toxicogenomics: A powerful tool for toxicity assessment, edited by Saura C. Sahu, John Wiley & Sons Ltd., Oct. 2008, pp. 27-57.
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  • Brooks, B., O’Brien, T.J., Ceryak, S., Wise, Sr., J.P., Wise, S.S., Wise, Jr., J.P., DeFabo, E. and Patierno, S.R. Excision Repair is Required for Genotoxin-Induced Mutagenesis in Mammalian Cells. Carcinogenesis, 29(5): 1064–1069, 2008.
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  • C. Farah, C. Zhong, M. Worboys and S. Nittel, Detecting Toplogoical Change using Wireless Sensor Networks, GIScience, Park City, Utah, September 2008 (accepted).
  • Caddle LB, Hasham MG, Schott WH, Shirley BJ, Mills KD. 2008. Homologous recombination is necessary for normal lymphocyte development. Mol Cell Biol 28:2295-2303. PMC2268416
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  • Connerney, J., Andreeva, V., Leshem, Y., Mercado, M.A., Yang, X., Friesel, R., and Spicer, D.B. Twist homodimers promote increased FGF-responsiveness and craniosynostosis. Developmental Biology, 318:323-334, 2008.
  • Connerney, J., V. Andreeva, Y. Leshem, M.A. Mercado, K. Dowell, X. Yang, V. Lindner, R.E. Friesel, and D.B. Spicer (2008) Twist1 homodimers enhance FGF responsiveness of the cranial sutures and promote suture closure. Dev. Biol. 318; 323-334.
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  • Craft, CS, Li, Xu, Romero, D, Vary, CPH, and Bergan, RC. Genistein induces phenotypic reversion of endoglin deficiency in human prostate cancer cells. Mol Pharmacol 2008; 73:235-242.
    Romero, D, Iglesias, M, Vary, CPH, and Quintanilla, M. Functional blockade of Smad4 leads to a decrease in ?-catenin levels and signaling activity in human pancreatic carcinoma cells. Carcinogenesis 2008; 5:1070-1076.
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  • Croall, D.E., Vanhooser, L.M. and Cashon, RE Detecting the Active Conformation of Calpain-2 with Calpastatin-Based Reagents. In Press BBA: Proteins and Proteomics
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  • Goodale, B.C., Walter, R., Pelsue, S.R., Thompson, W.D., Wise, S.S., Winn, R.N., Mitani, H., Wise Sr., J.P. The Cytotoxicity and Genotoxicity of Hexavalent Chromium in Medaka (Oryzias latipes) Cells. Aquatic Toxicology 87: 60–67, 2008.
  • Gould TJ, Gunewardene MS, Gudheti MS, Verkhusha VV, Yin SR, Gosse JA, Hess ST. 2008. Imaging Molecular Positions and Anisotropies. Nature Methods 5: 1027-30.
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  • Gould TJ, Hess ST. 2008. Nanoscale Imaging of Intracellular Fluorescent Proteins: Breaking the Diffraction Barrier. Biophysical Tools for Biologists, Vol. 2. Ed. Detrich HW, Methods in Cell Biology 89: 329-358.
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  • Harris MA, Yang H, Low BE, Mukherjee J, Guha A, Bronson RT, Shultz LD, Israel MA, Yun K. 2008. Cancer stem cells are enriched in the side population cells in a mouse model of glioma. Cancer Res 68: 10051-10059
  • Harris, M. A., Yang, H., Low, B. E., Mukherje, J., Guha, A., Bronson, R. T., et al. (2008). Cancer Stem Cells Are Enriched in the Side Population Cells in a Mouse Model of Glioma. Cancer Res, 68(24), 10051-10059. doi: 10.1158/0008-5472.CAN-08-0786.
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  • Harris, MA, Yang, H, Low, BE, Mukherje J, Guha A, Bronson RT, Shultz, LD, Israel, MA, Yun, K, (2008) Cancer stem cells are enriched in the side-population cells in a mouse model of glioma, Cancer Research (2008).
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  • Holmes, A.L., Wise, S.S. and Wise, Sr., J.P. Carcinogenicity of hexavalent chromium. Indian Journal of Medical Research, 128: 353-372, 2008.
  • Holmes, A.L., Wise, S.S., Goertz, C.E.C., Dunn, J.L., Gulland, F.M.D., Gelatt, T., Beckmen, K.B., Burek, K., Atkinson, S., Bozza, M., Taylor, R., Zheng, T., Zhang, Y., Aboueissa , A. and Wise, Sr., J.P. Metal Tissue Levels in Steller Sea Lion (Eumetopias jubatus) Pups. Marine Pollution Bulletin, 56(8): 1416-1421, 2008.
  • Holmes, A.L., Wise, S.S., Goertz, C.E.C., Dunn, J.L., Gulland, F.M.D., Gelatt, T., Beckmen, K.B., Burek, K., Atkinson, S., Bozza, M., Taylor, R., Zheng, T., Zhang, Y., Aboueissa , A., and Wise, Sr., J.P. Metal Tissue Levels in Steller Sea Lion (Eumetopias jubatus) Pups. Marine Pollution Bulletin 56(8) 1416-1421, 2008.
  • Holmes, A.L., Wise, S.S., Wise Sr., J.P. The Carcinogenicity of Hexavalent Chromium. Indian Journal of Medical Research, 128: 353-372, 2008.
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  • Ishikawa F, Saito Y, Yoshida S, Harada M, Shultz LD. 2008. The differentiative and regenerative properties of human hematopoietic stem/progenitor cells in NOD-SCID/IL2rgamma(null) mice. Curr Top Microbiol Immunol 324: 87-94
  • Ishimori N, Stylianou I, Korstanje R, Marion M, Li R, Donehue LR, Rosen C, Beamer W, Paigen B, Churchill (2008) Quantitative trait loci for bone mineral density in an SM/J by NZB/BINJ intercross population and identification of Trps1 as a probable candidate gene. Journal of Bone and Mineral Research 23(9):1529-1537
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  • Kano K, Marin de Evsikova C, Young J, Wnek C, Maddatu TP, Nishina PM, Naggert JK. 2008. A novel dwarfism with gonadal dysfunction due to loss-of-function allele of the collagen receptor gene, Ddr2, in the mouse. Mol Endocrinol 22: 1866-1880
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  • King M, Pearson T, Shultz LD, Leif J, Bottino R, Trucco M, Atkinson MA, Wasserfall C, Herold KC, Woodland RT, Schmidt MR, Woda BA, Thompson MJ, Rossini AA, Greiner DL. 2008. A new Hu-PBL model for the study of human islet alloreactivity based on NOD-scid mice bearing a targeted mutation in the IL-2 receptor gamma chain gene. Clin Immunol 126: 303-314
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  • Krom N., Recla J., Ramakrishna W. Analysis of genes associated with retrotransposons in the rice genome. Genetica. 2008 Nov; 134(3): 297-310. Epub 2007 Dec 9.
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  • Petkova SB, Yuan R, Tsaih SW, Schott W, Roopenian DC, Paigen B. 2008. Physiol Genomics. Genetic influence on immune phenotype revealed strain-specific variations in peripheral blood lineages. Physiol Genomics. 34(3):304-314.
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  • Prudovsky, I.; Tarantini, F.; Landriscina, M.; Neivandt, D.; Soldi, R.; Kirov, A.; Small, D.; Kathir, K.M.; Rajalingam, D.; Kumar, T.K. "Secretion without Golgi" Journal of Cellular Biochemistry 103, 1327 (2008)
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  • Ren G, Zhang L, Zhao X, Xu G, Zhang Y, Roberts AI, Zhao RC, Shi Y. Mesenchymal stem cell-mediated immunosuppression occurs via concerted action of chemokines and nitric oxide. Cell Stem Cell. 2008 Feb 7;2(2):141-50. (Featured Article)
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  • Renaud J, Kerjan G, Sumita I, Zagar Y, Georget V, Kim D, Fouquet C, Suda K, Sanbo M, Suto F, Ackerman SL, Mitchell KJ, Fujisawa H, Chédotal A. 2008. Plexin-A2 and its ligand Sema6A control nucleus-centosome coupling in migrating cerebellar granule cells. Nat Neurosci. 11:440-449.
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  • Romero, D, Iglesias, M, Vary, CPH, and Quintanilla, M. Functional blockade of Smad4 leads to a decrease in beta-catenin levels and signaling activity in human pancreatic carcinoma cells. Carcinogenesis 2008; 5:1070-1076
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  • Ron Lumia and M. Shahinpoor, “IPMC Microgripper Research and Development”, Journal of Physics CS, Institute of Physics, Journal of Physics: Conference Series 127 (2008) 012002, 2008-2009
  • Runx expression is mitogenic and mutually linked to wnt activity in blastula-stage sea urchin embryos. Robertson, A.J., Coluccio, A., Knowlton, P., Dickey-Sims, C., and Coffman, J.A. (2008). PLoS One. 3: 11.
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  • Ryzhov S., Novitsky S.V, Zaynagetdinov R., Goldstein A.E., Carbone D.P., Biaggioni I., Dikov M.M., Feoktistov I. Host A2B Adenosine Receptors Modulate Carcinoma Growth. Neoplasia. 2008; 10(9):987-995. PMCID: PMC2517644.
  • Ryzhov S., Solenkova N.V., Goldstein A.E., Lamparter M., Fleenor T., Young P.P., Greelish J.P., Byrne J.G, Vaughan D.E., Biaggioni I., Hatzopoulos A.K., Feoktistov I. Adenosine Receptor–Mediated Adhesion of Endothelial Progenitors to Cardiac Microvascular Endothelial Cells. Circ Res. 2008; 102(3): 356-363. PMCID: PMC2803108.
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  • Schmidt MR, Appel MC, Giassi LJ, Greiner DL, Shultz LD, Woodland RT. 2008. Human BLyS facilitates engraftment of human PBL derived B cells in immunodeficient mice. PLoS One 3: e3192
  • Serreze DV, Choisy-Rossi CM, Grier A, Holl M, Chapman HD, Gahagan JR, Osborne MA, Zhang W, King BL, Brown A, Roopenian DC, Marron MP 2008. Through regulation of TCR expression levels, an Idd7 region gene(s) interactively contributes to the impaired thymic deletion of autoreactive diabetogenic CD8+ T cells in NOD mice1. J Immunol 180(5):3250-9.
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  • Shin DM, Shaffer DJ, Wang H, Roopenian DC, Morse HC 3rd 2008 Identification of Notch as a component of the transcriptional networks regulating cell growth and survival in mouse plasmacytomas. Cancer Res. 68(22):9202-11. ?
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  • Simpson-Abelson MR, Sonnenberg GF, Takita H, Yokota SJ, Conway TF, Jr., Kelleher RJ, Jr., Shultz LD, Barcos M, Bankert RB. 2008. Long-term engraftment and expansion of tumor-derived memory T cells following the implantation of non-disrupted pieces of human lung tumor into NOD-scid IL2Rgamma(null) mice. J Immunol 180: 7009-7018
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    Underlying Muscle Morphogenesis. PLoS Genet 4(10): e1000219. doi:10.1371/journal.pgen.1000219
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  • Snow CJ, MF Goody, MW Kelly, EC Oster, R Jones, A Khalil, CA Henry. (2008). Time-Lapse Analysis and Mathematical Characterization Elucidate Novel Mechanisms Underlying Muscle Morphogenesis. PLoS Genet 4(10): e1000219
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  • Snow CJ, Peterson, M, Khalil A, Henry C 2008. Muscle development is disrupted in zebrafish embryos deficient for Fibronectin, Developmental Dynamics, 237, 2542-2553
  • Snow, C.J., Goody, M., Kelly, M.W., Oster, E.C., Jones, R., Khalil, A., and Henry, C.A. (2008) Time-lapse analysis and mathematical characterization elucidate novel mechanisms underlying muscle morphogenesis. PLoS Genetics, 4(10):e1000219
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  • Tasan M, Tian W, Hill DP, Gibbons FD, Blake JA, Roth FP. 2008. An en masse phenotype and function prediction system for M. musculus. Genome Biology. 9:S8. PMC2447542
  • The Gene Ontology Consortium*. 2008. The Gene Ontology (GO) Project in 2008. Nucleic Acids Res. 36(Database):D440-4.
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  • V. N. Tondare, B. C. Gierhart, D. G. Howitt, R. L. Smith, S. D. Collins, AN ELECTRON MICROSCOPY INVESTIGATION OF THE STRUCTURE OF POROUS SILICON BY OXIDE REPLICATION, Nanotechnology, 19(22), 225301-05 (2008).
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  • Wang, Q. H., F. Cheng, M. Lu, X. Tian, and J. P. Ma. (2008) Crystal structure of unliganded influenza B virus hemagglutinin. J. Virol. 82:3011-3020.
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  • Wise, S.S., Holmes, A.L., Wise Sr., J.P. Hexavalent Chromium-Induced DNA Damage and Repair Mechanisms. Reviews on Environmental Health, 23(1): 39-57, 2008.
  • Wise, S.S., Holmes, A.L., and Wise, Sr., J.P. Hexavalent chromium-induced DNA damage and repair mechanisms. Reviews on Environmental Health 23(1): 39-57, 2008.
  • Wise, Sr. J.P., Wise, S.S, Kraus, S. Shaffiey, F., Grau, M., Li Chen, T., Perkins, C., Thompson, W.D., Zheng, T., Zhang, Y., Romano, T., and O’Hara, T. Hexavalent Chromium Is Cytotoxic and Genotoxic to the North Atlantic Right Whale (Eubalaena glacialis) Lung and Testes Fibroblasts. Mutation Research. 650: 30–38, 2008.
  • Wise, Sr., J.P., Wise, S.S, Kraus, S. Shaffiey, F., Grau, M., Li Chen, T., Perkins, C., Thompson, W.D., Zheng, T., Zhang, Y., Romano, T. and O’Hara, T. Hexavalent Chromium Is Cytotoxic and Genotoxic to the North Atlantic Right Whale (Eubalaena glacialis) Lung and Testes Fibroblasts. Mutation Research, 650: 30–38, 2008.
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  • Wu, V.C.H.*, X. Qius, A. Bushwayc, and L. Harpers. 2008. Antibacterial effect of American cranberries (Vaccinium macrocarpon) on foodborne pathogens. LWT-Food Sci. Technol. 41: 1834-1841.
  • Wu, V.C.H.*, X. Qius, B. de los Reyesc, C.S. Linc, and Y.J. Panc. 2008. Application of cranberry concentrate (Vaccinium macrocarpon) to control Escherichia coli O157:H7 in ground beef and its antimicrobial mechanism related to the downregulated slp, hedeA and cfa. Food Microbiol. In press. Available online: Sept. 25, 2008. 10.1016/j.fm.2008.07.014.
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  • Wu, Y, Batuski, D, Khalil, A 2008. The Fractal Structure of the Universe. VDM Verlag. 80pp.
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  • Y. J. Jung and S. Nittel, Geosensor Data Abstraction for Environmental Monitoring Applications, GIScience, Park City, Utah, September 2008 (accepted).
  • Y.J. Jung, Y. K. Lee, D. G. Lee, K. H. Ryu, S. Nittel, Air Pollution Monitoring System using Geosensor Networks, International Geoscience and Remote Sensing Symposium (IGARSS), Boston, MA, July 2008
  • Yamamoto T, Kaizu C, Kawasaki T, Hasegawa G, Umezu H, Ohashi R, Sakurada J, Jiang S, Shultz L, Naito M. 2008. Macrophage colony-stimulating factor is indispensable for repopulation and differentiation of Kupffer cells but not for splenic red pulp macrophages in osteopetrotic (op/op) mice after macrophage depletion. Cell Tissue Res 332: 245-256
  • Yang, X., Harkins, L.K., Zubanova, O., Harrington, A., Kovalenko, D., Nadeau, R.J., Chen, P.Y., Toher, J.L., Lindner, V., Liaw, L., and Friesel, R. Overexpression of Spry1 in Chondrocytes Causes Attenuated FGFR Ubiquitination and Sustained ERK Activation Resulting in Chondrodysplasia. (Developmental Biology, in press, PMID 18582454).
  • Yun K, Tennent B. (2008) Cancer stem cells. Drug Discov Today: Disease Models 4:47-52.
  • le Viseur C, Hotfilder M, Bomken S, Wilson K, Rottgers S, Schrauder A, Rosemann A, Irving J, Stam RW, Shultz LD, Harbott J, Jurgens H, Schrappe M, Pieters R, Vormoor J. 2008. In childhood acute lymphoblastic leukemia, blasts at different stages of immunophenotypic maturation have stem cell properties. Cancer Cell 14: 47-58
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Group toggle arrow2007

  • **This paper was selected by the Editors as a “Spotlight” article for the September 2007 edition of Infection and Immunity.**
  • *Lowe, B.A., *J.D. Miller, and M.N. Neely. Analysis of the polysaccharide capsule of the systemic pathogen, Streptococcus iniae and its implications in virulence. Infection and Immunity. 75:1255-1264. 2007.
  • *Phelps, H.A., M.N. Neely. SalY of S. pyogenes lantibiotic locus is required for full virulence and intracellular survival in macrophages. Infection and Immunity. 75:4541-4551. 2007.
  • *Speshock, J.L., N. Doyon-Reale, R. Rabah, M.N. Neely and P.C. Roberts. Filamentous influenza A virus infection predisposes mice to fatal septicemia following superinfection with Streptococcus pneumoniae (serotype 3). Infection and Immunity. 75:3102-3111. 2007.
  • 28. Nikopoulos GN, Duarte M, Kubu CJ, Bellum, S., Friesel, R., Maciag, T., Prudovsky, I, Verdi, JM. "Soluble Jagged1 Attenuates Lateral Inhibition Allowing for the Clonal Expansion of Neural Crest Stem Cells.” Stem Cells. 2007 , 25: 3133-3142
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  • Wark, M.; Kalanyan, B.; Ellis, L.; Fick, J.; Connell, L. : Neivandt, D.; Vetelino J. "A Lateral Field Excited Acoustic Wave Sensor for the Detection of Saxitoxin in Water", Ultrasonics Syposium 2007, IEEE, 1217 (2007)
  • Wise SS; Thompson, WD; Aboueissa, A-M; Mason, MD; Wise, JP. “Particulate Depleted Uranium Is Cytotoxic and Clastogenic to Human Lung Cells” Journal of Chemical Research in Toxicology 20 (5): 815-820 May 2007.
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  • Woo Y, Wright SM, Maas SA, Alley TL, Caddle LB, Kamdar S, Affourtit J, Foreman O, Akeson EC, Shaffer D, Bronson RT, Morse HC 3rd, Roopenian D, Mills KD. 2007. The nonhomologous end joining factor Artemis suppresses multi-tissue tumor formation and prevents loss of heterozygosity. Oncogene Sept 6;26(41):6010-20.
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  • Wu, V.C.H., S-H Chens, and C-H Linc*. 2007. Real-time detection of Escherichia coli O157:H7 sequence using a circulating-flow system of quartz crystal microbalance. Biosens. Bioelectron. 22: 2967-2975.
  • Xie, H., Holmes, A.L., Wise, S.S., Huang, S., Peng, C., Wise Sr., J.P. Neoplastic Transformation of Human Bronchial Cells by Lead Chromate Particles. American Journal of Respiratory Cell and Molecular Biology, 37: 544-52, 2007.
  • Xie, H., Holmes, A.L., Wise, S.S., Huang, S., Peng, C., and Wise, Sr., J.P. Neoplastic Transformation of Human Bronchial Cells by Lead Chromate Particles. American Journal of Respiratory Cell and Molecular Biology. 37(5): 544-552, 2007.
  • Y. Wu*, M. Lu*, M. Chen, J. Li, and J. Ma. (2007) OPUS-Ca: A knowledge-based potential function requiring only C alpha positions. Protein Sci. 16:1449-1463. (*equal contribution)
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  • Zhang, Y., Holford, T.R., Leaderer, B.,Boyle, B., Zhu, Y., Wang, R., Zou, K., Zhang, B., Wise, Sr., J.P., Qin, Q., Kilfoy, B., Han, J., and Zheng, T. Ultraviolet Radiation Exposure and Risk of Non-Hodgkin Lymphoma. American Journal of Epidemiology, 165(11):1255-64, 2007.
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